Detailed information on CNT30257590


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT0|PSBM_ATRBE, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179299Avena sativaSecale cereale54.7532.8495.82311forward
CNT30434962Avena sativaAegilops tauschii54.7521.3695.82311forward
CNT3017973Avena sativaZea mays63.9126.8191.74363reverse complement
CNT30341167Avena sativaEragrostis tef59.1571.3492.26336forward
CNT30585624Avena sativaEchinochloa crusgalli60.7461.0691.88345forward

Expression of CNT30257590

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GCPCDPYKVGHIIHTYIIVCITIIKRKGNWIRLRKIMG*

>peptide 2 (57 aa)
MIPLFPPHGIISPVIVKIKNKEVMEVNILAFIATALFILVPTAFLLIIYVKTVSQND*

Sequence

>CNT30257590
GGATGTCCATGTGACCCATATAAAGTTGGTCATATAATACATACATACATAATTGTATGTATAACTATAATAAAAAGGAAGGGAAATTGGATAAGATTAA
GAAAGATCATGGGTTAGAGGTATAGAAAAGAAAAAGGAGAAAAGGATTAAAAAAAGAAAAGAGGGAATTCCTAATCCAATCAAAAAAACCATTTTGGTCT
TAGTATGGATAAAGGGTCTTCCTATGTTATAGTATTCCCCTCTCAACTATGAATTGATTTGATAGATCCGATATTCATAATATTGAATTGATTCAGTATT
ATCAGACTGCAAGCTCTACCCTTGAATTTACATGATACCCCTTTTTCCTCCCCATGGGATTATATCCCCAGTTATTGTGAAAATAAAAAATAAAGAGGTT
ATGGAAGTCAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTAGTTCCTACTGCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATG
ATTAGTTGGAATTCCAATTAATCATTGAAGAAATGCAAAAGGGATTAAATAAAAAAAATCCAAGTCTT