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Detailed information on CNT30221321


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A328|PETN_COFAR, E-value = 2e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Hordeum vulgareSetaria viridis31.4542.1983.96424forward
CNT30179299Hordeum vulgareSecale cereale51.4173.1891.05693reverse complement
CNT30293440Hordeum vulgareTriticum aestivum25.8289.2391.38348forward
CNT30434962Hordeum vulgareAegilops tauschii59.254.8192.61798reverse complement
CNT30257601Hordeum vulgareAvena sativa44.8195.7292.22604reverse complement
CNT3017973Hordeum vulgareZea mays44.2944.0990.79597forward
CNT30343618Hordeum vulgareEragrostis tef33.9867.4592.79458forward
CNT30585671Hordeum vulgareEchinochloa crusgalli44.2144.1289.26596forward

Expression of CNT30221321

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MNGVVAINARILTSITSLFFIFTITRDVIPWRGKRGIL*

>peptide 2 (50 aa)
MGFLIGLGIPSFVILFSTFSFLYLLPTSFLNLIQFLFLFLIVIHTIMYVLY

>peptide 3 (29 aa)
MDIVSLAWASLMVVFTFSLSLVVWGRSGV*

>peptide 4 (35 aa)
MVKKSSIHKKIRLSSTELFTAYHTFSICFILFLYS*

Sequence

>CNT30221321
CTGTACCCTTGATTCCACTATGATTATTGATCTATAGTAGAATAATCCCTTCATAGAAATAGGAGACATAATTTAGATGGATATAGTAAGTCTCGCTTGG
GCTTCTTTAATGGTAGTGTTTACATTTTCTCTTTCACTAGTAGTATGGGGAAGGAGTGGAGTCTAGGGATACGATACTACTAATTGATTAAGTAATCAAA
TTGTTGTATCAATTCTTTTTTTTAATTGATCGTTTTGCATTAATTATTTTGTCAAACGTTATTCTTTAATCTTTTTCTTTAGTTTTGTTTCACTCCTGTA
AGAAACTCTTGTATTGTAAGAAAGAGCCATTATACCAATTAAGAATTTCTACTAGAAATGACTAATGGTTAAAAAAAGTTCTATACATAAGAAAATTAGA
CTTTCTTCCACAGAACTATTCACGGCATATCACACATTTTCCATTTGTTTTATACTCTTTCTTTATTCTTAGAATAATTTTTATTCTCTTTGGAAGCATC
TCGCGGGATATTTAAGCATGAAAGATTCGCTGGTTTTTTCCTTTTAATTTTTACTATAGTCTATTCTTATATTATTTTTCTTTCCTTCCATGGATTCTTT
GGTCAAGAATTGTCTTCGATTTTTTTATTTTGACCTGATTGAAATTAAGTGGATGCAATGAAAAAAGAAATTGAATTAGACTACTTAACTATTTCAATGT
ACTAATCTATTCTATGTAGATTCAAAGATAATATAATAGAAAGACTCTAAAGTGTCGTAGAAAAAACTATATGTAGTTCTTTCTACCACACTTTAAGATT
CCAACTAGATCCTTTCATTTAAGACTTGGATTCTTTTTATTTAATCCCTTTTTCATTTCTTCAATGATTAATTGGAATTCCACTTAATTATTTTGCTGAC
TGTTTTTACATAAATAATAAGTAAAAAAGAAGTAGGAATTAGAATGAACGGTGTAGTAGCAATAAATGCGAGAATATTGACTTCCATAACCTCTTTATTT
TTTATTTTCACAATAACTCGGGATGTAATCCCATGGAGAGGAAAAAGGGGTATCTTGTAAATTCAAGGGTAGGGCTTGCATTCTAATAATACTGAATCAA
TTCAATATTATGAATATCGGATCTATCAAATCAATTCATGGATGAGATTATATAGTATAACATAGGAAGATCCTATATCCATACTAAGACCAAAATGGGT
TTTTTGATTGGATTAGGAATTCCCTCTTTTGTAATCCTCTTTTCTACTTTTTCTTTTCTATATCTCTTACCCACGAGCTTTCTTAATCTTATACAATTTC
TCTTCCTTTTTCTTATAGTTATACATACAATTATGTATGTATTATATG