Detailed information on CNT30627897


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000577, E-value = 2e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677554Daucus carotaSetaria viridis10.760.0788.2161forward
CNT30201082Daucus carotaPisum sativum2051.0290.37301forward
CNT3048549Daucus carotaPrunus dulcis43.3275.6485.58652reverse complement
CNT30162946Daucus carotaPistacia vera3.7926.1587.7257forward
CNT30194485Daucus carotaSecale cereale13.6922.4688.83206forward
CNT30291378Daucus carotaTriticum aestivum16.6827.5288.05251forward
CNT30226496Daucus carotaHordeum vulgare15.2298.7182.53229forward
CNT30509326Daucus carotaSolanum lycopersicum11.575.8881.5173reverse complement
CNT30146680Daucus carotaMedicago truncatula20.424.590.88307forward
CNT30444216Daucus carotaAegilops tauschii9.127.1386.13137forward
CNT30258536Daucus carotaAvena sativa17.2839.0488.46260forward
CNT3018234Daucus carotaZea mays5.4522.1689.0282forward
CNT30606537Daucus carotaGossypium raimondii20.2718.1487.87305forward
CNT30716815Daucus carotaMalus domestica golden9.8324.3891.22148reverse complement
CNT30683107Daucus carotaTriticum urartu17.8724.8487.73269forward
CNT30477847Daucus carotaArabidopsis halleri12.0982.7393.96182forward
CNT30622174Daucus carotaCajanus cajan18.7438.7492.55282forward
CNT30596588Daucus carotaOryza meridionalis15.3599.5784.42231forward
CNT30416518Daucus carotaPapaver somniferum6.4522.9390.7297reverse complement
CNT3058691Daucus carotaAmborella trichopoda7.6425.7391.3115forward

Expression of CNT30627897

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MFFRGVHHAIKRIFLIEKSMSYSITLREQENNSLTRGSVLSLFTCQTGPIIDLRY*

>peptide 2 (48 aa)
MNSHSIKNFVFEYLFPVRIKIKIQSIGLLTNLIRSVSIEKSILCGNPD*

Sequence

>CNT30627897
AGAGTTTTATTGCCCCCTATTTGCTTTGCATGAAAATACAATAGATGAATAGTCATTCGATTAAAAATTTTGTATTTGAATATCTTTTTCCTGTCAGAAT
AAAGATAAAAATCCAATCAATAGGATTATTAACTAATCTAATAAGGAGTGTTAGTATTGAAAAAAGTATTCTTTGTGGGAATCCAGATTAGCACTTCACT
ATACACTATATATGAAAATTTTTTTTGTAAAATCTCGTCTAATAACTAACTAATAAAAAAAAGTAATAAGTTTCTAGTCCAACACGTAACAAAAAGGACA
ATATACAGGATGGGTAGAAAGAGTTGTGATACTTGGCTCGATCCATAGAAATTCAGGATATAAAAGAATATACCAATCCTAAGGATCCATCGAATTAATT
GTGGATCCAACACACCAATAGAAACATTTGAATTGTTTAGTCTTATATTTTATATATTGTTCTATATTTATCTAAAATCAAAATAGATATATTTGTTTTC
GGCTCAATCCTTTTAGTAAAAGATTGGGCCGAGTTTAATTGCAATTCAATTAATAGAACAAACAGTAATTAGAATTAGTGGATTACAAGGTATCCATTGC
TTCAAATTCAAATTTGATCTCCTTCCATACTTCACAAGCAGCAGCTAGTTCAGGGCTCCATTTAGTAGCCTCACGGATAATCTCATTCCCTTCACGAGCA
AGATCACGCCCCTCATTACGAGCTTGTACACATGCTTCTAGAGCTACTCGATTAGCTACGGCACCGGGTGCATTTCCCCAAGGGTGTCCTAAAGTTCCTC
CACCGAACTGTAGTACCGAATCATCCCCAAAGATCTCGGTCAGAGCAGGCATATGCCAAACGTGAATACCTCCCGAAGCCACGGGTAGAGCACCTCGTTT
ACACGCGCGCCAATGTTTTTCAGGGGGGTCCATCATGCAATCAAAAGAATTTTTCTTATTGAGAAATCTATGTCTTACTCCATAACTTTGAGGGAACAAG
AGAACAATAGCCTGACAAGGGGTTCAGTCTTGTCCCTTTTTACGTGCCAAACAGGCCCCATCATTGATTTGAGATATTGATAAGGTAAATGTCTATTCAA
TGCTAGGCATAATGAGTATAAGGACCTCAAAAAAAGATCTTTTCGCCCTATGAACTTTAAGGTGTATGAAGTTTCATATTTCATTTTTAAGCAGGGCGGT
AGAGACTTCATCTAACTTAGGTTAATCTAGGCCAGAGGCAGACCTACGTCAAGATACCCCCCTTGAAACACTTTGGTAGTGTTCCTGGATCAGAATTTAA
ATAATGACTCAGAGCACATGGAGCCATCTTCTTTTTTTCTATCAAAAAAAATATGGCGGACTAGCTGATATTTCTATCAGTTAATGAAAGAGCCCAATGC
ACAAAAAATGCATGTTGGGTCTTTGAAACAGTTCAGATCATTTTGATAATAAAAAGTTTGATCCGTTTTACCGAGAAAGTCTACGGTTCGAGTCCGTATA
GCCCT