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Detailed information on CNT30716772


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001477, E-value = 7e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708286Malus domestica goldenGlycine max12.7426.1284.68111forward
CNT3048549Malus domestica goldenPrunus dulcis93.3494.3292.62813reverse complement
CNT30605830Malus domestica goldenGossypium raimondii51.0972.2482.47445forward
CNT30416518Malus domestica goldenPapaver somniferum21.3543.9788.17186reverse complement

Expression of CNT30716772

Peptides detected in this lncRNA

>peptide 1 (40 aa)
GPITLMDYKCNITYKQYQSNVSKRYNVGSCNIHLDKKLST*

>peptide 2 (33 aa)
MSLHHVIKKIFDLIEKSMSYSMNFREQNKRTIA*

>peptide 3 (51 aa)
MLDRVIFILTRNYLHDKICITRTIAQLGRATRLHARQCFSDESPSCNQKNI*

Sequence

>CNT30716772
GGGACCTATCACATTGATGGATTATAAATGTAATATTACTTATAAGCAATACCAATCAAACGTATCAAAGAGATATAATGTTGGATCGTGTAATATTCAT
CTTGACAAGAAATTATCTACATGATAAAATATGTATCACAAGGACTATAGCTCAGTTAGGTAGAGCAACTCGTTTACACGCGCGCCAATGTTTTTCAGAT
GAGTCTCCATCATGTAATCAAAAAAATATTTGATCTTATTGAGAAATCGATGTCTTACTCTATGAATTTTAGGGAACAAAACAAGAGAACAATAGCCTGA
CAAAGGGTTTGGTCCGATTCGGTTGCCTATTTAGGTGTCAGAACCCCTCATTGATTTGAGATATTGATAAGGTGAATTCCCTGTCTATTCAATGCCAGGC
ATAATGAGTATAAGGACCTCAAAAAAACTCTCTTTTCGTTCTTATGAACTTTAATGTGTATGAAGTTTCATTTTTGATTCAAGAGGGCGATAGAAACTAT
ATTTAACTTAAGTTGATCTAGGACAGAAGCATACCTTCGTCAGGATAACCCTTCTTTGAAACACTTTGGTAGTGCTCCTGGATTGGAGTGAATCCACATA
ATAAATCAGAGCACACGTGGAACCATCTTTTTATCTTTCTGTCAAGAAAAATGTGGTAGACTAGCCGATATTTATATCAGTTAATGAAAAGAGCCCAATG
CAAAAAAATGCACGTTGGGTCTTTGAAACAGTTTAAATCATTTTGATAATAAGAAGTTTGATCTTTTTTACAGAGAAGGTCTACGATTCGAGTCCGTATA
GCCCTAAAACCTAAAAATGAAAATAAAAAAATGAAAAGAAAATGAAAATATGCTATATATTTATATATATA