Detailed information on CNT30345947


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L376|PSBB_SACHY, E-value = 5e-119

BLAST vs NONCODE:
NONORUT005754, E-value = 1e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401703Eragrostis tefBeta vulgaris12.6736.2587.5112forward
CNT30199419Eragrostis tefPisum sativum57.014587.9504forward
CNT30507056Eragrostis tefNicotiana attenuata13.122591.38116forward
CNT3090241Eragrostis tefSolanum tuberosum48.4232.4785.51428forward
CNT30390502Eragrostis tefTriticum turgidum59.2839.2595.04524forward
CNT30135381Eragrostis tefLolium perenne47.9649.1394.58424forward
CNT30679618Eragrostis tefTriticum urartu46.6155.393.45412forward
CNT30365219Eragrostis tefSorghum bicolor19.1220.7697.04169reverse complement
CNT30577123Eragrostis tefOryza barthii39.5991.3894350forward
CNT30175108Eragrostis tefVigna angularis11.5431.8789.22102forward

Expression of CNT30345947

Peptides detected in this lncRNA

>peptide 1 (61 aa)
TLSTIKRSIRRTWGLIEVRSLPDGRLLTSIKLFHFLVGTLGGSRKKIAKKIIPKVETKRNV*

>peptide 2 (38 aa)
MFQIPLEHPSLDQYQQKHLGIRFERHAKCVRKRRAKQK*

>peptide 3 (39 aa)
MFPMSNQKREVKNTIAMRYQTVCLLVVGSPTFWNVPNST*

>peptide 4 (30 aa)
MPNVSEKEEQSKSSMTKSEPTPWTAPKNTI*

Sequence

>CNT30345947
ACCCTCTCAACAATTAAGAGATCCATTCGAAGAACATGGGGACTAATTGAAGTAAGAAGTCTCCCAGATGGGAGACTTCTTACTTCAATTAAATTATTTC
ATTTTTTAGTCGGAACCTTAGGCGGTTCTCGGAAGAAGATAGCGAAAAAAATTATCCCTAAAGTCGAAACTAAAAGGAACGTATAAACCAATGCTTCCAT
AGATTCGATCGTGGTTTATTTACAATTATAACTTCCACACCTATTCACTTGTCATTTGGGATCATTTCCCATATAAAAAAGAAAAAGAGTCAAAGAAAGG
ATAGGAGATGTTTCCCATGTCAAATCAAAAAAGAGAGGTGAAAAATACCATAGCAATGCGGTATCAGACTGTCTGTCTCCTTGTAGTTGGATCCCCAACT
TTTTGGAATGTTCCAAATTCCACTTGAGCATCCAAGTCTGGATCAATACCAGCAAAAACATCTCGGAATAAGGTTCGAGCGCCATGCCAAATGTGTCCGA
AAAAGAAGAGCAAAGCAAAAGTAGCATGACCAAAAGTGAACCAACCCCTTGGACTGCTCCGAAAAACACCATCTGATTTCAAAGTAGCTCGATCTAATTC
AAAAATTTCTCCTAATTGAGCACGCCTCGCATATTTTTTTACAGTAGCAGGATCAGAATAACTTACTCCATTAAGTTCGCCCCCATAGAACTCCACTGTT
ACGCCTACTTGTTCAACGCTATATTTGGATTCTGCTCTTCTAAAAGGAACGTCTGCTCTCACAATTCCCTCTTCATCTACCAAAACTACCGGAAATGTTT
CAAAAAAAGTAGGCATACGACGTACAAAAAGCTCGCGCCCTTCTTTATCTCTAAAGACGGGATGTCCTAACCATCCAACAGCTA