Detailed information on CNT30365219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401703Sorghum bicolorBeta vulgaris10.226.8689.1683reverse complement
CNT30200898Sorghum bicolorPisum sativum10.3223.889.2984reverse complement
CNT30226086Sorghum bicolorHordeum vulgare53.448.1995.17435reverse complement
CNT30398268Sorghum bicolorTriticum turgidum30.8423.4694.82251reverse complement
CNT30688804Sorghum bicolorTriticum urartu53.4411.7495.63435reverse complement
CNT30345947Sorghum bicolorEragrostis tef20.7619.1297.04169reverse complement

Expression of CNT30365219

Peptides detected in this lncRNA

>peptide 1 (32 aa)
DVFAGIDPDLDAQVEFETFQKVGDPTTRRQAA*

>peptide 2 (67 aa)
MEALVYTFLLVSTLGKFFSLSSSENHLRFRLSAGRATHQPTSNRGENLACRNKSVNSRRQQNTAVCS*

>peptide 3 (47 aa)
EMFLLVLIQTWMLKWNLKHSKKLEIQLQGDRQPDTTLLWYLSPLFFV*

>peptide 4 (68 aa)
MSQQKRQFEASAKHRRLFLKQNPLAPRDGSRGWPYADSSSTSSTKSESNLSVGFPMNKNSWARQSERF*

Sequence

>CNT30365219
GAGATGTTTTTGCTGGTATTGATCCAGACTTGGATGCTCAAGTGGAATTTGAAACATTCCAAAAAGTTGGAGATCCAACTACAAGGAGACAGGCAGCCTG
ATACCACATTGCTATGGTATCTTTCACCTCTCTTTTTTGTTTGATTTGACATGAGGAACATCTCCTGTCCTTTCTTTATCTCTTTTTCTTTTTTATATGG
GAAATGATCCCAAATGATAAGTGAATAGGTGTGGAAGTTATAATTGTAAATAAACCAGGATCGAATCTATGGAAGCATTGGTTTATACGTTCCTTTTAGT
ATCGACTTTAGGGAAATTTTTTTCGCTATCTTCTTCCGAGAACCACCTAAGGTTCCGACTAAGTGCCGGGCGTGCGACCCATCAACCTACTAGCAATAGG
GGAGAAAACTTAGCATGTCGCAACAAAAGCGTCAATTCGAGGCGTCAGCAAAACACCGCCGTCTGTTCCTAAAACAAAACCCCTTAGCGCCCCGAGACGG
GAGTCGGGGATGGCCCTACGCAGACAGCAGCAGCACCAGCTCTACAAAGTCCGAATCGAATCTTTCGGTTGGCTTTCCCATGAATAAGAATAGTTGGGCG
CGGCAAAGCGAGCGCTTCTAGCTGTTTCGCTTGCTTCTTTCTTATTGTGGCGGCTATTATAGCGTGGCTGAAATGAACGAAAAGCGATACTTTAAAATCG
ATTGATAGATGGCCTGATCTGTTCTGATAGATCGAAAGGGAATCTATCAATAATAAGGGTTGACCTCTTTCTATCCATTGATGATACAAGATATCTTGTC
CTTGGGGAACCATC