Detailed information on CNT30401703


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30199805Beta vulgarisPisum sativum33.9821.2193.33105forward
CNT30390502Beta vulgarisTriticum turgidum36.258.3989.29112forward
CNT30598987Beta vulgarisFraxinus excelsior25.242.6288.4678forward
CNT30135381Beta vulgarisLolium perenne30.7411.0188.4295forward
CNT30717085Beta vulgarisMalus domestica golden39.8115.9586.99123forward
CNT30679618Beta vulgarisTriticum urartu31.3913.0289.6997forward
CNT30345947Beta vulgarisEragrostis tef36.2512.6787.5112forward
CNT30365219Beta vulgarisSorghum bicolor26.8610.289.1683reverse complement
CNT3053422Beta vulgarisAmborella trichopoda41.425.2589.06128reverse complement
CNT30577123Beta vulgarisOryza barthii30.7424.887.3795forward
CNT30175108Beta vulgarisVigna angularis24.623.7589.4776forward

Expression of CNT30401703

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPNEACPKVNQPLGLLRKTPSDFKVARSNSKISPN*

Sequence

>CNT30401703
CCCGATAATGATAAAAAAGGGCGGTAATTAAAATCAAGATTGCTCTAGTATCCTATGTCAAATCACAAAGCAATGTTGTATTAAACCCCTTGTCTTCGTG
TAGTTGGATCTCCAATTTTTTGGAATGCGCCAAATTCTACTTGAACATCCAAATCGGGGTCAATACCAGCAAAAACATCTCTGAACAAGGTTCTAGACCC
ATGCCAAATGAGGCATGTCCAAAAGTAAACCAACCCCTCGGACTACTACGAAAAACACCATCAGATTTCAAAGTAGCACGGTCTAATTCGAAAATTTCAC
CCAATTGAG