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Detailed information on CNT3090241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNS4|PSBB_ATRBE, E-value = 1e-77

BLAST vs NONCODE:
NONBRAT002845, E-value = 5e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019629Solanum tuberosumCitrullus lanatus16.9254.2686.55223forward
CNT30730483Solanum tuberosumCorchorus capsularis11.7635.1592.26155forward
CNT30401838Solanum tuberosumBeta vulgaris11.4639.3290.07151forward
CNT30629037Solanum tuberosumVigna unguiculata10.9326.7288.19144forward
CNT30199419Solanum tuberosumPisum sativum30.836.2589.66406forward
CNT30507056Solanum tuberosumNicotiana attenuata32.1791.3897.41424forward
CNT30194113Solanum tuberosumSecale cereale11.6135.5884.97153forward
CNT30390502Solanum tuberosumTriticum turgidum30.9630.5686.27408forward
CNT30511491Solanum tuberosumSolanum lycopersicum19.830.4298.08261reverse complement
CNT30231593Solanum tuberosumAnanas comosus12.2220.4387.58161forward
CNT30345947Solanum tuberosumEragrostis tef32.4748.4285.51428forward
CNT30574487Solanum tuberosumVitis vinifera21.8546.6886.46288forward
CNT30108418Solanum tuberosumOryza longistaminata10.9331.5181.25144forward
CNT30577123Solanum tuberosumOryza barthii23.9882.5184.49316forward
CNT30116377Solanum tuberosumOryza nivara12.945.4580.59170forward
CNT30175108Solanum tuberosumVigna angularis7.9732.8191.43105forward

Expression of CNT3090241

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MCPKKKSKANEACPKVNQPLGLLRKTPSDFKVARSN*

>peptide 2 (37 aa)
MPNVSEEEEQSKRSMPKSKPTPWTATKNTIGFQSSTI*

Sequence

>CNT3090241
TTTGAAAAAATTTTGGAGCCCGGACACAAGGTCTGAATATTAAGTATGAATCATAGTTCAAATATTTCTTAATCTATTTTGTGTTCCAAATATTCGAATA
AATATCTGACGAAGTAGAACCATCTCTATCAAGATAACAGACCCATTCTCTGTACTATCAATAGGATCAATTATAACAAGTCACACACTCATACTCCGGA
AATACAGAAACAAAGAAATTCCACGATCGAACTACCAAAACAAAATAGAACGGACTATAAATTGGGGCTCTAAATGATTCATTTTGGACTCAAAAGAACG
GACTTTGTGGTCCTTATAAATCTAATTCATTGAAATCCCATCCAATAAAACAGAAGAATTATAAATCTCCAAAATAATAGATAGAAATACTGCAAATAAG
GCCATTGCGACACCCATCAAAGGAGTAGTTCCCCACCCAGGAGCTACTTTACCATATTCTGAATTCAATGGTTCAGAACCGCCTAAAGTTCCAACTAAAA
AGAACTAAAAGGGTGAAATAATTTTTCATTATCTCAGTTGAAGTACTGAGCCTCCCGATATCGGGAGGCTCAGTACTTCAACTGAGATAATGAAAAATTA
TTTCACCCTTTTAGTTCTTTTTAGTTGGAACTTTAGGCGGTTCTCGAAAAAAGATAGCGAAAAAAATTATCCCTAGAGTCGAGACTAAGAGGAATGTATA
AACCAATGCTTCCATAGATTCGATCGTGGTTTACAATTATAGCTTTCATACCTGTTTGTTTCTTTTTATTTCCTTTTTTTATCATCTTCCAGATAAAGAA
CGAACAAGAGTAAAAACGAAGTTGATTCAAATAAAGATTTCTCTGGTACCCTATGTCAATAAAAGTAAAAGAAAGAAAATAAGGGCGAAAGAAAGATACC
AAAGCAATGTTGTATCAGGCTGCCTGTCTTTTTGTAGTTGGATCTCCAAGTTTTTGGAATGCTCCAAATTCGACTTGAGCATCTAAATCTGGGTCAATAC
CAGCAAAAACATCTCTGAACAAGGTTCTAGCACCATGCCAAATGTGTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAAACCAACCCCT
TGGACTGCTACGAAAAACACCATCGGATTTCAAAGTAGCACGATCTAATTAAAAAAATTCACCCAATTGAGCACGTGTAGCATATTTTTTCACAGTAGTA
GGATCACTATAACTAACGTTGTTGAGTTCACCGCCGTAGAGCTCAACAGTTACACCTACTTGTTCAACACTATACTTCAATTTTGCCCTTCTATAACGAA
CATCGGCTCTAACAATTC