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Detailed information on CNT30390502


BLAST search results

BLAST vs Swiss-Prot:
sp|P24065|PSBB_WHEAT, E-value = 1e-158

BLAST vs NONCODE:
NONORUT005754, E-value = 3e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019629Triticum turgidumCitrullus lanatus8.0926.2892.59108forward
CNT30401703Triticum turgidumBeta vulgaris8.3936.2589.29112forward
CNT30199419Triticum turgidumPisum sativum52.9663.1287.98707forward
CNT30507056Triticum turgidumNicotiana attenuata8.0923.2889.81108forward
CNT3090241Triticum turgidumSolanum tuberosum30.5630.9686.27408forward
CNT30283847Triticum turgidumTriticum aestivum42.5541.5898.24568forward
CNT30147444Triticum turgidumMedicago truncatula7.4929.5991100reverse complement
CNT30135381Triticum turgidumLolium perenne60.1593.0596.14803forward
CNT30679618Triticum turgidumTriticum urartu55.7399.8796.91744forward
CNT30345947Triticum turgidumEragrostis tef39.2559.2895.04524forward
CNT30577123Triticum turgidumOryza barthii26.2291.3895.43350forward
CNT30175108Triticum turgidumVigna angularis7.6431.8788.24102forward

Expression of CNT30390502

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ISISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD*

>peptide 2 (41 aa)
MGDVSHVKSKKRGERYYNNVYQAACFLVVGSPTFWNVPNST*

>peptide 3 (37 aa)
MPNVSEKEEQSKGSMTKSEPTPWTAAKNTIRFQSSPV*

>peptide 4 (37 aa)
HLHIWFTCKLYWVCLIYRVWATLSTIKRSIRRTRRLI*

Sequence

>CNT30390502
CCATCTCCATATCTGGTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATTAAGAGATCCATTCGAAGAACA
CGGAGACTAATTTAAGTAAGAAGTCCCCCTATCTGGGAGACTTCTTACTTAAATGAAATTATTTTATTCTTTTAGTTGGAGTTGGTGGAACCTTAGGTGG
TTCTCGGAAGAAGATAGCGAAAAAAATTATCCCTAAAGTCGAAACTAAAAGGAACGTATAAACCAATGCTTCCATAGATTCGATCCTGGTTTATTTACAA
TTATAACTTCCACACCTATTCATTTGTCATTTGGGATAATTTCCCATATAAAGAAAGAAAAAGAGTCAAAGAAAGGATGGGAGATGTTTCCCATGTCAAA
TCAAAAAAGAGAGGTGAAAGATACTATAACAATGTGTATCAGGCTGCCTGTTTCCTTGTAGTTGGATCTCCCACTTTTTGGAATGTTCCAAATTCCACTT
GAGCATCCAAATCTGGATCAATACCAGCAAAAACATCTCGGAACAATGTTCTAGCGCCATGCCAAATGTGTCCGAAAAAGAAGAGCAAAGCAAAGGTAGC
ATGACCAAAAGTGAACCAACCCCTTGGACTGCTGCGAAAAACACCATCAGATTTCAAAGTAGCCCGGTCTAATTCAAAAATTTCCCCTAATTGAGAACGC
CTCACATATTTTTTTACAGTAGCAGGATCAGAATAACTTACTCCATTAAGTTCGCCACCATAGAACTCCACCGTTACGCCTACTTGTTCAACACTATATT
TGGATTCTGCTCTTCTAAAAGGAACGTCTGCTCTAACAATTCCCTCCTCATCTACCAAAACAACCGGAAATGTTTCAAAAAAAGTAGGCATACGGCGTAC
AAAAAGCTCACGTCCTTCTTTATCTCTAAAGACGGGATGTCCTAACCATCCAACAGCTATTCCATCCCCATTGTCCATTGAGCCTGCTCTGAATAATCCC
CCTTTTGCCGGATTATTACCAATATAATCATAAAAGGCTAATTTTCGGGAATTTTAGACCAAGCTTCTGATAAACTAAGATTTTCGGCTAAACCATTGCT
AACTCTTCGATATATTTCTTGCTGAAAGTATCCCTGATCCCACTGATAACGAGTAGGCCCAAATAATTCGATTGGGGTCGTTGCTCACCCATACCACATA
GTTCCAGCAACTACGAAAGCTGCAAAAAAACAGCAGCGATACTACTAGAAAGTACAGTTTCAATATTGCCCATACGTAATCCTTTATATAGACGTTGAGG
CGGACGGACACTAAGATGGAATAAGCCCGCTAATA