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Detailed information on CNT30507056


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3C1K2|PSBT_NICSY, E-value = 3e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019629Nicotiana attenuataCitrullus lanatus56.6863.9987.07263forward
CNT3090241Nicotiana attenuataSolanum tuberosum48.0616.9298.21223forward
CNT30390502Nicotiana attenuataTriticum turgidum23.288.0989.81108forward
CNT30345947Nicotiana attenuataEragrostis tef2513.1291.38116forward
CNT3053422Nicotiana attenuataAmborella trichopoda52.169.9383.47242reverse complement

Expression of CNT30507056

Peptides detected in this lncRNA

>peptide 1 (30 aa)
STTKRSIRGTWRLVEVLSLPVSGGSVLQLR*

Sequence

>CNT30507056
TCTCAACAACTAAGAGATCCATTCGAGGAACATGGAGACTAGTTGAAGTACTGAGCCTCCCGGTATCGGGAGGCTCAGTACTTCAACTGAGATAATGAAA
AATTATTTCACCTTTTTAGTTCTTTTTAGTTGGAACTTTAGGCGGTTCTCGAAAAAAGATAGCGAAAAAAATTATCCCTAGAGTCGAGACTAAGAGGAAT
GTATAAACCAATGCTTCCATAGATTTAATCGTGGTTTACAATTATAGCTTTCATACCTGTTTGTTTCTTTTTATTTTCTTTTTTTTAATCATCTTCCGGA
TAAAGAACGAACAAGAGTAAAAACGAAGTTGATTCAAATAAAGATTTCTCTGTTACCCTATGTCAATAAAAGTAAAAGAAAGAAAATAAGGGCGAAAGAA
AGATACCAAGGCAATGTTGTATCAGGCTGCCTGTCTTTTTGTAGTTGGATCTCCAAGTTTTTGG