Detailed information on CNT30175108


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QD63|PSBB_CUCSA, E-value = 1e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401703Vigna angularisBeta vulgaris23.7524.689.4776forward
CNT30199805Vigna angularisPisum sativum32.8121.2193.33105forward
CNT3090241Vigna angularisSolanum tuberosum32.817.9791.43105forward
CNT30390502Vigna angularisTriticum turgidum31.877.6488.24102forward
CNT30135381Vigna angularisLolium perenne31.8711.8288.24102forward
CNT30679618Vigna angularisTriticum urartu31.8713.6989.22102forward
CNT30345947Vigna angularisEragrostis tef31.8711.5489.22102forward
CNT3026898Vigna angularisPopulus trichocarpa22.510.0187.572reverse complement
CNT30577123Vigna angularisOryza barthii31.2526.1189100forward

Expression of CNT30175108

Peptides detected in this lncRNA

>peptide 1 (54 aa)
RISFKECNQMCPKKNSRANEACPKVNQPLGLLQETSSDFKVARLAYFLKVAGSL*

Sequence

>CNT30175108
CGAGAATCTCTTTCAAAGAATGCAACCAAATGTGCCCGAAAAAGAATAGCAGAGCAAATGAAGCATGCCCAAAAGTAAACCAACCCCTTGGACTGCTACA
AGAAACATCATCTGATTTCAAAGTAGCACGTCTAGCATATTTTTTGAAAGTAGCGGGATCACTATAACTTACTCCATTAAGCTCACCACCATAGAACTCA
ACAGTTACACCTACTTGTTCGACAATATATAGGTACATAAGTTTAAGAAAATCTACAAACCCTAACAAAAAGTCTTAAGCTCAAAACACATAAGAGAAAA
CTAAAATTACAAACACAGAC