Detailed information on CNT30679618


BLAST search results

BLAST vs Swiss-Prot:
sp|P24065|PSBB_WHEAT, E-value = 1e-129

BLAST vs NONCODE:
NONBRAT002845, E-value = 3e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401703Triticum urartuBeta vulgaris13.0231.3989.6997forward
CNT30199419Triticum urartuPisum sativum80.9453.8487.06603forward
CNT3090743Triticum urartuSolanum tuberosum23.2238.4489.02173forward
CNT30283847Triticum urartuTriticum aestivum68.7237.4895.51512forward
CNT30390502Triticum urartuTriticum turgidum99.8755.7396.91744forward
CNT30135381Triticum urartuLolium perenne100.1386.4494.64746forward
CNT30345947Triticum urartuEragrostis tef55.346.6193.45412forward
CNT30577123Triticum urartuOryza barthii45.3788.2593.79338forward
CNT30175108Triticum urartuVigna angularis13.6931.8789.22102forward

Expression of CNT30679618

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SEQCSSAMPNVPEKEEQSKGSMTKSEPTPWTAAKNTIRFQSSPV*

>peptide 2 (67 aa)
MSALTIPSSSTKTTGNVSKKVGTRHTKSSGPSLSLNTGCPNHPTAIPSPLSIEPALNNPPFAGLLPI*

Sequence

>CNT30679618
CTCAGAACAATGTTCTAGCGCCATGCCAAATGTGCCCGAAAAAGAAGAGCAAAGCAAAGGTAGCATGACCAAAAGTGAACCAACCCCTTGGACTGCTGCG
AAAAACACCATCAGATTTCAAAGTAGCCCGGTCTAATTCAAAAATTCCCCCTAATTGAGAACGCCTCGCATATTTTTTTACAGTAGCAGGATCAGAATAA
CTTACTCCATTAAGTTCGCCACCATAGAACTCCACCATTACACCTACTTGTTCAACACTATATTTGGATTCTGCTCTTCTAAAAGCAATGTCTGCTCTAA
CAATTCCCTCCTCATCTACCAAAACAACCGGAAATGTTTCAAAAAAAGTAGGCACACGGCATACAAAAAGCTCAGGTCCTTCTTTATCTCTAAATACGGG
ATGTCCTAACCATCCAACAGCTATTCCATCCCCATTGTCCATTGAGCCTGCTCTGAATAATCCCCCTTTTGCCGGATTATTACCAATATAATCATAAAAG
GCTAATTTTTCAGGAATTTTAGACCAAGTTTCTGATAAACTAAGATTTTCGGCTAAACCATTGCTTACTCTTCGATATTTCTTGCTGGAAGTATCCCTGA
TCCCACTAATAACGAGTAGGCCCAAATAATTCGATTGGGGTCGTTGCTGACCCATACCACATAGTTCCAGCAACTACGAAAGCTGCAAAAAACAGCAGCG
ATACTACTGGAAAGTATAGTTTCAATATTGCCCATACGTAATCCT