Detailed information on CNT30345520


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 2e-147

BLAST vs NONCODE:
NONBNAT002216, E-value = 2e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Eragrostis tefNymphaea colorata59.8146.1186.99515forward
CNT30534453Eragrostis tefEucalyptus grandis59.2345.2988.24510forward
CNT30186721Eragrostis tefSecale cereale55.448.0493.92477forward
CNT30285424Eragrostis tefTriticum aestivum55.6367.2894.78479forward
CNT30554829Eragrostis tefOryza glaberrima70.3850.7193.07606forward
CNT30596888Eragrostis tefOryza meridionalis70.555.6993.08607forward
CNT30369277Eragrostis tefOryza glumipatula59.2352.3193.33510forward
CNT30582453Eragrostis tefEchinochloa crusgalli59.2348.1194.12510forward
CNT30117559Eragrostis tefOryza nivara59.2347.9392.35510forward

Expression of CNT30345520

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

>peptide 2 (29 aa)
MAHRQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 3 (35 aa)
MENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

Sequence

>CNT30345520
TGATAAATGGGTACCATGTGCAGAAAGATGTCATCTCTGTAAATAAAAATTTACAGCTCCATGCTTATTTAATTTATTGAGTCATTCATCAGGCCCATCC
AGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTACTCGTACACCCACAGGTACAATAGTACATACGAATA
CGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGG
GGTCGGCGAGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTC
GGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGACGCGG
TATCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCCAGCCCGC
CCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCC
CAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCCGTGTCCCACCCGTAGTCGCCG
GGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCCAGGTACTTGACGC