« Back to Oryza glumipatula search


Detailed information on CNT30369277


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 6e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Oryza glumipatulaOryza sativa62.3656.6196.88608forward
CNT30521860Oryza glumipatulaSetaria italica54.7747.6488.76534forward
CNT30641326Oryza glumipatulaNymphaea colorata60.5152.8286.78590forward
CNT30188246Oryza glumipatulaSecale cereale57.6453.0790.21562forward
CNT30285424Oryza glumipatulaTriticum aestivum49.5467.8491.72483forward
CNT30225735Oryza glumipatulaHordeum vulgare59.6972.4885.22582forward
CNT30555049Oryza glumipatulaOryza glaberrima62.3651.6197.04608forward
CNT30443381Oryza glumipatulaAegilops tauschii50.0550.4188.52488forward
CNT30239714Oryza glumipatulaAvena sativa59.6957.5190.03582forward
CNT30141287Oryza glumipatulaLolium perenne59.6957.2387.29582forward
CNT3011673Oryza glumipatulaZea mays43.3854.393.38423forward
CNT30345520Oryza glumipatulaEragrostis tef52.3159.2393.33510forward
CNT30363150Oryza glumipatulaSorghum bicolor6048.3992.65585forward
CNT30596888Oryza glumipatulaOryza meridionalis54.2648.5396.03529forward
CNT30582453Oryza glumipatulaEchinochloa crusgalli53.7449.4392.75524forward
CNT30497363Oryza glumipatulaDigitaria exilis60.2149.8789.95587forward
CNT30117570Oryza glumipatulaOryza nivara62.3658.2496.71608forward
CNT30604592Oryza glumipatulaOryza punctata58.1556.8793.3567forward

Expression of CNT30369277

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRGHGSTAAAALTCRGRSWWSARFSRGPLPVTMAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 2 (78 aa)
KQANFIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQIARMLCAWIKLGLPR*

Sequence

>CNT30369277
AAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCT
CTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACT
CTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGAC
GAAGTTGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCG
AGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAAGCTCGGGT
TGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGACCCCGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGG
GAACACGCAGCCCAGCGCGCCGAGCATCGCCCACCTGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCG
GTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGGCCATGG
TGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCTGCTGCTGCTGGGGTGTGTGTGCGTGCTG