CANTATAdb - search

Detailed information on CNT30186721

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 4e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690606	Secale cereale	Oryza sativa	46.32	53	93.48	460	forward
CNT30285424	Secale cereale	Triticum aestivum	48.54	67.7	95.85	482	forward
CNT30395272	Secale cereale	Triticum turgidum	40.79	42.86	98.27	405	forward
CNT30250005	Secale cereale	Avena sativa	68.18	78.9	92.32	677	forward
CNT3011673	Secale cereale	Zea mays	45.62	58.15	93.38	453	forward
CNT30345520	Secale cereale	Eragrostis tef	48.04	55.4	93.92	477	forward
CNT30596888	Secale cereale	Oryza meridionalis	48.04	43.76	92.03	477	forward

Expression of CNT30186721

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

>peptide 3 (35 aa)
MENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30186721
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGAACCCGAACATGGAGAACATGGCGAGGC
GGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCAC
GATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACG
AGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGA
GCAGCTCGGGGAAGACGCAGCCCAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGA
CAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTG
GGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCG
CCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTT