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Detailed information on CNT30596888


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 5e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186721Oryza meridionalisSecale cereale43.7648.0492.03477forward
CNT30285424Oryza meridionalisTriticum aestivum52.5780.4890.05573forward
CNT30554829Oryza meridionalisOryza glaberrima71.8365.5296.68783forward
CNT30443381Oryza meridionalisAegilops tauschii39.0844.0189.44426forward
CNT30141287Oryza meridionalisLolium perenne49.1752.786.75536forward
CNT3010541Oryza meridionalisZea mays43.6759.593.49476forward
CNT30345520Oryza meridionalisEragrostis tef55.6970.593.08607forward
CNT30369277Oryza meridionalisOryza glumipatula48.5354.2696.03529forward
CNT30582453Oryza meridionalisEchinochloa crusgalli61.3863.1189.54669forward
CNT30604592Oryza meridionalisOryza punctata46.3350.6593.86505forward

Expression of CNT30596888

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 2 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

>peptide 3 (35 aa)
MENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 4 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

Sequence

>CNT30596888
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGCGGGCCCTTGCCGCC
GAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCG
CCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGG
CGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCC
GAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTG
GCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGC
CGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCCGGCTTGGGCTTCGCGGCGGAGGTCGACGGCGCCGCGCGGGCCATCACCGG
GGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTT