Detailed information on CNT30534453


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-179

BLAST vs NONCODE:
NONBNAT005173, E-value = 1e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30345520Eucalyptus grandisEragrostis tef45.2959.2388.24510forward
CNT30363150Eucalyptus grandisSorghum bicolor51.5147.9786.9580forward
CNT30497363Eucalyptus grandisDigitaria exilis56.0453.6187.48631forward
CNT30604592Eucalyptus grandisOryza punctata54.8861.9985.28618forward

Expression of CNT30534453

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPLRARSSGKTHPRAPSMAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 2 (71 aa)
MGLGTWRGLDHTMGSQRRLACGRPSSWRFSHCREAREWRGRASPPVQPGMERREPWWKPPLLSGFESLTSV*

>peptide 3 (34 aa)
EIGQDQDRLDHRKLWRTRFADKSMKVKWQIMKEN*

>peptide 4 (43 aa)
MACTKNPNMENMASLPFLISFTLSSAKASGSSARPKGSKLPPG*

>peptide 5 (39 aa)
MEILPLPRSSGVEGESFTACPARDGEERAMVEAAIVEWI*

Sequence

>CNT30534453
GAAATTGGGCAAGATCAAGATCGCTTGGACCATAGAAAGCTTTGGAGGACAAGGTTTGCAGATAAATCTATGAAGGTTAAGTGGCAAATAATGAAGGAAA
ACTAGGGAACAAACGTGGGAGTCGAGTCGAAAAAGGAAGGAAGATGATTGAAGATGTCACTCAAGAGTCAAGCCAGCGGCAATACATGTAATTTACACTT
CTGAAAGTATCGTTTCCAACCGAACTGTATATCACCCCTCACGCTCACTTTCCAGGGACGAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTAACTGGAT
CAGCAAGGTGGTCAGCCAAGTTCTCCAATGGACCCTTTCCTGTCACAATGGCCTGCACGAAGAACCCAAACATGGAGAACATGGCAAGCCTGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCAAAGGCCTCAGGGTCATCGGCCAGGCCCAAGGGGTCGAAGCTCCCCCCGGGGTAGAGCGGGTCGGTGACCTCACCG
AGCGGGCCACCAGCAATACGGTAACCCTCGACGGCTCCCATCAGGATGACTTGGCAGGCCCAGATGGCCAAGATGCTTTGGGCGTGGATCAGGTTGGGGT
TGCCCAGGTAGTCGAGCCCTCCCTCGCTAAAGATCTGGGCGCCAGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTGCGGGCCAGGAGCTCGGG
GAAGACGCACCCCAGGGCACCGAGCATGGCCCACCTGCAGTGGATGACTTCAAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGTCCGGCG
GTGTCCCAGCCGTAGTCACCGGGGAACTCGCCAGTGAGGTAGCTCGGGGGCTCGCCGGAGAATGGGCCTAGGTACTTGGCGCGGTCTGGACCATACCATG
GGCTCCCAGAGGAGACTGGCTTGCGGACGGCCTTCCTCATGGAGATTCTCCCATTGCCGAGAAGCTCGGGAGTGGAGGGGGAGAGCTTCACCGCCTGTCC
AGCCAGGGATGGAGAGGAGAGAGCCATGGTGGAAGCCGCCATTGTTGAGTGGATTTGAGAGCTTGACCTCTGTCTAGTGTTGAAATAGAGAGTTGAGATG
GATTGGCGATGGTTGTTGGGACTTGT