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Detailed information on CNT30582453


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 4e-144

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Echinochloa crusgalliOryza sativa57.6456.8991.33611forward
CNT30285424Echinochloa crusgalliTriticum aestivum52.2677.8192.96554forward
CNT30224540Echinochloa crusgalliHordeum vulgare57.5556.1286.89610forward
CNT30554829Echinochloa crusgalliOryza glaberrima66.515988.94705forward
CNT30443381Echinochloa crusgalliAegilops tauschii39.8143.691.94422forward
CNT30240130Echinochloa crusgalliAvena sativa64.7267.7990.82686forward
CNT30141287Echinochloa crusgalliLolium perenne50.6652.889.94537forward
CNT3011335Echinochloa crusgalliZea mays52.2654.2692.24554forward
CNT30345520Echinochloa crusgalliEragrostis tef48.1159.2394.12510forward
CNT30363150Echinochloa crusgalliSorghum bicolor57.1750.1293.89606forward
CNT30596888Echinochloa crusgalliOryza meridionalis63.1161.3889.54669forward
CNT30369277Echinochloa crusgalliOryza glumipatula49.4353.7492.75524forward
CNT30103289Echinochloa crusgalliOryza rufipogon50.3848.7791.2534forward
CNT30497363Echinochloa crusgalliDigitaria exilis56.5150.8990.32599forward
CNT30117559Echinochloa crusgalliOryza nivara57.6457.4291.16611forward
CNT30603457Echinochloa crusgalliOryza punctata46.1350.9992.84489forward

Expression of CNT30582453

Peptides detected in this lncRNA

>peptide 1 (51 aa)
WVVHARDCSSKSTVESKEKRRAGLDGIQYNQTMNAAIPSRLNPRNLHHGTN*

>peptide 2 (61 aa)
MVTRASPKRDDGTFTALPAKAVEERAMVLVAIALLTPRCLVVDEVVRLADGLRCLETTKVFK

>peptide 3 (87 aa)
MVQTETRARSHPDTLQHIQQFGINASLAGHEVGGVGPGIVVDGVGEVVGKPNMENMARRPFLSSLTLSSAKASGSSARPSGSKLPPG*

>peptide 4 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 5 (32 aa)
GLCTHAIAQANQRLKAKKKDELGWTGYNTIRQ*

Sequence

>CNT30582453
CTGGGTTGTGCACGCACGCGATTGCTCAAGCAAATCAACGGTTGAAAGCAAAGAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATG
AACGCTGCAATTCCTTCTCGGTTGAACCCTCGTAATTTACACCATGGTACAAACTGAAACCAGGGCGCGCTCACATCCGGACACCCTACAGCATATCCAA
CAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGCCGAACA
TGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCC
GGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGA
ATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCAGACGGCCTCGCCGAACT
TGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAA
GGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGG
TAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAG
ACGATGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCTAACACCGAGGTGTCTTGTGGTTGA
TGAAGTGGTGAGACTCGCAGATGGCTTGAGATGTCTGGAGACGACCAAGGTATTTAAAGC