« Back to Triticum aestivum search


Detailed information on CNT30285424


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 1e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Triticum aestivumOryza sativa64.615394.57460forward
CNT30521860Triticum aestivumSetaria italica67.5642.9187.73481forward
CNT30641326Triticum aestivumNymphaea colorata67.743.1587.97482forward
CNT30186721Triticum aestivumSecale cereale67.748.5495.85482forward
CNT30554829Triticum aestivumOryza glaberrima80.4847.9590.05573forward
CNT30250005Triticum aestivumAvena sativa67.756.1892.53482forward
CNT30656522Triticum aestivumTriticum dicoccoides64.7561.9699.13461forward
CNT3011673Triticum aestivumZea mays59.4154.394.8423forward
CNT30345520Triticum aestivumEragrostis tef67.2855.6394.78479forward
CNT30596888Triticum aestivumOryza meridionalis80.4852.5790.05573forward
CNT30369277Triticum aestivumOryza glumipatula67.8449.5491.72483forward
CNT30149090Triticum aestivumBrachypodium distachyon58.4342.6290.14416forward
CNT30103422Triticum aestivumOryza rufipogon67.737.1693.36482forward
CNT30575045Triticum aestivumOryza barthii67.1350.6494.14478forward
CNT30582453Triticum aestivumEchinochloa crusgalli77.8152.2692.96554forward
CNT30117559Triticum aestivumOryza nivara67.8445.3993.17483forward
CNT30604592Triticum aestivumOryza punctata66.7147.6492.63475forward

Expression of CNT30285424

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MDEAGVAEVVEAALAEDLGAGLEPHGLAELDAVAGEQLREDAAERAQHGPPAVDHLQLPVLGEGLGVGREPRGVPSVVAGELTGEV

>peptide 2 (35 aa)
MENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 3 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 4 (32 aa)
NNSLLHSTFVLYIMHGCSTNETQLHARMHAHT*

>peptide 5 (89 aa)
TTAFCIQPSYFTSCMVVVQTKPSCMHACMRTLDRVRTYVHGRFPDITQHLAAYLPGTKLVAKAQALLLTGSARWSARSRTWRTWRGGRS*

Sequence

>CNT30285424
AACAACAGCCTTTTGCATTCAACCTTCGTACTTTACATCATGCATGGTTGTAGTACAAACGAAACCCAGCTGCATGCACGCATGCATGCGCACACTTGAT
CGCGTACGTACGTACGTGCACGGTCGGTTTCCAGACATAACACAACACCTAGCAGCTTACTTGCCGGGCACGAAGTTGGTGGCAAAGGCCCAGGCGTTGT
TGTTGACGGGGTCGGCAAGGTGGTCGGCGAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCC
TCGGGGTCGTCAGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCGA
CGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCATGGACGAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAA
GATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCC
CACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGCCCCGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCAC
CGGTGAGGTAGC