Detailed information on CNT30121209


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09MI4|PSBM_CITSI, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098653Citrus clementinaSolanum tuberosum59.0135.9182.24321reverse complement
CNT30223326Citrus clementinaHordeum vulgare18.0136.787.7698forward
CNT3087474Citrus clementinaVigna radiata20.0424.688.07109forward
CNT30258796Citrus clementinaAvena sativa19.324.3689.52105reverse complement
CNT30313897Citrus clementinaCamelina sativa33.0935.2986.67180reverse complement
CNT30341167Citrus clementinaEragrostis tef19.8522.9388.89108reverse complement

Expression of CNT30121209

Peptides detected in this lncRNA

>peptide 1 (32 aa)
YHTIESHRLLLILVRWFHLRLRHEIEFFFLNP*

Sequence

>CNT30121209
TCTACCATACTATCGAATCTCATAGGCTACTGCTGATTCTAGTCCGTTGGTTTCATTTAAGACTAAGACATGAAATTGAATTTTTTTTCTTAAATCCTTG
ATAAGAACTATAAGAACTAAGAAGTCAAGTTTCGTTCAAATTAATCACTTTGACTGACCGTTTTTACGTATATTATAAGCAAAAACGCAGTAGGAACTAG
AACGAACAGTGTAGTAGCAATAAATGCGAGAATATTTACTTCCATAGTCTCATCGTTTGGTTTTTTTTTTTTACTTCGCAATAACTCGGGATTTAATCCC
ATAGAGATGATAACCCTTTCGCTTGTAAATTCAATGGGATGAATTACATTTCGATGATAGCGAATGGGATCAATATCATGAATAACAATATTTGACTGTC
AAGTCGATTCATCGTCGAGAATTCAATAGTATAACATAGGCAGCTCTTTTATCCACACACCAAATACAAACTTTGATTCCTGATTCAATCAAAAGAATTC
CTTTACTTTAATACTAATACTTTTTTAATACTAATACTTTTTTA