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Detailed information on CNT3098653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT0|PSBM_ATRBE, E-value = 4e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615871Solanum tuberosumSesamum indicum27.6349.785.83247forward
CNT30223326Solanum tuberosumHordeum vulgare16.6755.8185.23149reverse complement
CNT30258796Solanum tuberosumAvena sativa12.4225.7589.19111forward
CNT30341167Solanum tuberosumEragrostis tef12.1923.1488.07109forward
CNT3057411Solanum tuberosumAmborella trichopoda29.8723.9580.9267reverse complement
CNT30121209Solanum tuberosumCitrus clementina35.9159.0182.24321reverse complement

Expression of CNT3098653

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSYSLNYYIFDFQYEISVSIERIKSMKQKRYI*

>peptide 2 (34 aa)
MEVNILAFIATALFILVPTSFLPIIYVKTVSQND*

Sequence

>CNT3098653
TGAATATCTATAAAAGAACAAATAATAAAAAATGATAAATAAATAAAGAAATTTTGGGTTAGGTCAGCAATCCAAGTTTGGGGCGGTATGGATAAATGAA
CTTCCTATGTTATACTATTCAATTCTCGACGACGAATTTTATTTGATAGTTCAGTTATTGTTATTCATGATATTGATCTGATTCAAGATCATCGAGAGGT
AATATTCATTCATTGAATTTATAGGCCAAAGATTTATCATCTCTATGGATTAAATCCCGAGTTATTGCGAAGTAAAAAACCGATGAGATTATGGAAGTAA
ATATTCTTGCATTTATTGCTACTGCACTATTTATTCTAGTTCCTACCTCTTTTCTACCTATCATTTATGTAAAAACGGTCAGTCAAAATGATTAATTATT
AACTAATTTGAATGAAACTTGACTTCTGAGTTCTTAGCCAAATTTGACGAAATAAAATGAAAAAGATTCCAATTTCATGTCTTAAATGAAATGAGTGGAC
TAGAATCGGCAGTATTCTAATAGATAGATAGTATGGTAGAAGAAATAGATGTAATCTTTCTACCATCTATTTATTAGTTAGATTCTTGTTATAAAGCTTC
CCCGTGGAATAAAATAAAGATAGAGGTTGCATTTGATATGGATCTATATATCAATCTACAATATTATCTTGATATATGCGAATATCAATTCCATATATGG
GATTGACATAGCATCCAATTCCATTTATTTTGCTATATCTATTTGTTCTGATCAATCTGAATTACTCCTATGTCTTATAGTTTGAATTACTATATTTTTG
ATTTCCAATATGAAATCTCGGTATCTATTGAGAGAATCAAATCAATGAAGCAAAAGCGATACATATAGGCATATTCAAAAATCACGTAGTAATC