Detailed information on CNT3017973


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3A9|PSBM_SACHY, E-value = 3e-14

BLAST vs NONCODE:
NONCSAT001406, E-value = 6e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Zea maysSetaria viridis20.5327.6689.57278forward
CNT30515578Zea maysJuglans regia7.3129.3893.9499reverse complement
CNT30179299Zea maysSecale cereale20.9729.9994.01284reverse complement
CNT30293440Zea maysTriticum aestivum13.1545.6493.82178forward
CNT30221321Zea maysHordeum vulgare25.1125.2290.29340forward
CNT30257590Zea maysAvena sativa25.1159.8691.47340reverse complement
CNT30341167Zea maysEragrostis tef25.1872.495.6341reverse complement
CNT30100227Zea maysOryza rufipogon11.8938.0697.52161forward
CNT30585624Zea maysEchinochloa crusgalli25.3360.7194.17343reverse complement

Expression of CNT3017973

Peptides detected in this lncRNA

>peptide 1 (38 aa)
FIEIGDIIYMDIVSLTWAALMVVFTFSLSLVVWGRSGL*

>peptide 2 (45 aa)
FHRNRRHNLHGYSKSHLGCFNGSLYIFSFASSMGEEWTLGILPID*

>peptide 3 (31 aa)
MIPTRPFHLRLGFFIFFNPFFISSMINWNSN*

>peptide 4 (43 aa)
MSKKKVLYIRKLEHKKIRLSYTKLFTIYRTFSIYTIFLFLENF*

>peptide 5 (48 aa)
MNNAVAINARIFTSITSLFIYFFHNNSGCNPMERKKGYPVNSRGGLAF*

Sequence

>CNT3017973
CTTTCATAGAAATAGGAGACATAATTTACATGGATATAGTAAGTCTCACTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCTCTTTCGCTAGTAGTATG
GGGGAGGAGTGGACTCTAGGGATACTACCAATTGATTGAGTAGTCGAATTGTAGTATCAACTCTTTTCTTTAATTGATCGTTTTGCATTAATAATTTTGC
CAAACTTTATTTTTTCTCTCTTTCTTTAGTTTTGTTTCACTCTTGTAAGAAACTCTTTTAAGAAAGTAAGAAAGAGTCGTTCTATTCCAGTATAATAGAA
TAGAAAGGGCGATTATAGTAATTCATAACTTCTATTCTACTAGAAATTATGAGTAAAAAGAAAGTTCTATACATAAGAAAATTAGAACATAAGAAAATTA
GACTTTCTTACACGAAGCTATTCACAATATATCGCACATTTTCCATTTATACTATTTTCTTATTCTTAGAAAATTTTTGATGTTCTTTTTTTTTTTTTTT
GAAGGATCTCGATTGAAGCATCTCGCACCTTTTTTAAGCATGAAAGATTCGTAGGTTTTTTCCTTTTACTTTTTTTCTTTTACTATAATCTATTCTAGTC
TATTCTCGTATTATTTTTCTCCCCCTCCTTGGATTCTTTCAATGAAGAATTATCTTCGATTTTTTTGATTTTGACTTGATTGAAATTAAGTGGATGCAGT
GAAAAAAGAAGTTGAATTAGACTACTATTTCAATCTACTAATCGATTCTATGTAGATTCAAGATAATATAATAGAAAGAATCTAAAGTGTGGTAGAAAAA
ACTATATGTAGTTCTTTCTACCACACTTTATGATTCCAACCAGACCCTTTCATTTAAGACTTGGATTTTTTATTTTCTTTAATCCCTTTTTCATTTCTTC
AATGATTAATTGGAATTCCAATTAATCATTTTGACTGGCTGTTTTTACATAAATAATAAGTAAAAAGGCAGTAGGAACTAGAATGAACAATGCTGTAGCA
ATAAATGCGAGAATATTTACTTCCATAACCTCTTTATTTATTTATTTTTTTCACAATAACTCGGGATGTAATCCCATGGAGAGGAAAAAGGGGTATCCTG
TAAATTCAAGGGGAGGACTTGCATTCTGATAATACTGAATCAATTCAATATTATGAATATTGCATCTATCAAATCAATTCATGGTGGATAGTGGAATAAT
ATAACATAGGAAGATCTCTTATCCATACTAAGACCAAAATAGGTTTTTTGATTGGATTCGAAACCCCCTCTATTCTTTTTTCATTCTTTTCTACTTTTGC
TTTTCTATATGTATAACCCAAAATCTTTCTTATCTTATCCAATTTCACTTCCTT