Detailed information on CNT30727389


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381728Corchorus capsularisManihot esculenta26.7919.4891.6760forward
CNT30507384Corchorus capsularisNicotiana attenuata31.723.2892.9671forward
CNT3086859Corchorus capsularisVigna radiata26.7919.879560forward
CNT30143764Corchorus capsularisMedicago truncatula28.5721.1990.6264forward
CNT30128358Corchorus capsularisCorymbia citriodora32.1426.0994.4472reverse complement
CNT30478496Corchorus capsularisArabidopsis halleri30.3631.7888.2468forward
CNT30153271Corchorus capsularisPrunus persica28.1220.7992.0663forward
CNT30334668Corchorus capsularisCynara cardunculus33.4812.638875forward

Expression of CNT30727389

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTRPIWQGLWERLPGPPRVRLVSQSSENLPLRTVEG*

Sequence

>CNT30727389
GCCGAGCTGGGTAACGCCATCTTGTAACCCGGGCCTTGAGGTGATTGGACAATGACTCGGCCCATCTGGCAGGGTCTGTGGGAGCGTCTTCCTGGCCCGC
CCCGCGTGAGGCTGGTTTCACAGAGCAGCGAAAACCTCCCGCTCCGGACAGTGGAAGGATAACGGGCCGGTGCTTCCTAGACCCAAATTGTCTGGTGGGC
TGAGATCAATTGGACATCACCTTT