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Detailed information on CNT30356369


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618185Lactuca sativaSesamum indicum5.9524.1483.04112reverse complement
CNT30379209Lactuca sativaManihot esculenta8.2951.1584.62156forward
CNT30507382Lactuca sativaNicotiana attenuata5.6434.7582.08106forward
CNT3046253Lactuca sativaPrunus dulcis5.8551.6485.45110reverse complement
CNT30612441Lactuca sativaArabis alpina5.7435.0684.26108reverse complement
CNT30210362Lactuca sativaHelianthus annuus13.582.7487.4254forward
CNT30716661Lactuca sativaMalus domestica golden6.4339.0385.12121forward
CNT30479039Lactuca sativaArabidopsis halleri5.8535.9582.73110forward
CNT30644548Lactuca sativaCannabis sativa4.4125.7889.1683forward
CNT3030733Lactuca sativaTheobroma cacao7.9249.1783.22149forward
CNT30334668Lactuca sativaCynara cardunculus1650.6784.05301forward
CNT30723384Lactuca sativaLupinus angustifolius7.5546.7183.1142forward

Expression of CNT30356369

Peptides detected in this lncRNA

>peptide 1 (39 aa)
TIIKARFSKGMGSNLQFTKTWKAYKLLHFLSLWRWLNHR*

>peptide 2 (36 aa)
MDSHFFFSFFKTVLKIGSIIFMIFIFYGKARNKKNK*

>peptide 3 (79 aa)
MSGSVHRQKKRRKKVLYCLSFILESSRERFQLPKYHSLSCKQIPLFKTIRQFLFSVYSLESIDKKNVIKPYMKSLAKGK*

>peptide 4 (53 aa)
MAPRAEGNALGWLHRAANTSRFEQWKDNKSVLSWPIITSLAPSNGLPLFFFLF*

>peptide 5 (89 aa)
MLRKCLVDESAVVPLEDIQVDSNLNYIERPVAILDRKTKTLRNKVVQLVKVQWQHRKGSEWTWETEGEMREHYPELFLDSTATAFEDEA*

Sequence

>CNT30356369
CACAATTATAAAAGCGAGATTTTCGAAAGGAATGGGGAGTAACTTGCAATTTACGAAAACTTGGAAAGCATATAAACTCCTGCACTTTCTAAGTCTTTGG
CGGTGGTTGAATCATAGATAAAAGGAGCAACCGACATTGAATCGTGAAAAAAGAAATTGAATTTACGAAAGGTTCTGCAACATCTGGAGGAGTAAGTGAG
TGTTGTTAATCAGGATTAATACACAGATTTTGTAGAGAAATCATGTCGGGTTCAGTTCATAGACAGAAAAAGAGAAGAAAAAAGGTATTATATTGTCTAA
GTTTCATACTTGAATCTTCGAGAGAACGATTCCAATTACCCAAATATCATAGTTTATCTTGTAAACAAATTCCACTTTTCAAAACTATTCGACAATTTCT
TTTTTCAGTTTACAGTCTTGAATCCATTGATAAAAAAAACGTTATCAAACCATACATGAAATCACTTGCAAAAGGGAAGTAGTAATCAGAGGATTTGGCA
GATATTAAGAAAAGATTGCGTTCTACATCCCACATCGGTTGGAGTAAAAATTCTTCTCACTGTTTTATACATCAAACGGACTGCAATTATTGCCGAGCTT
GGTAACGCGAGCTTGTGACTCTAGTGAGGGCTTTAAAGTGGGTTGGACTGAGATTGAGCCAAGTTTGGTTGGGTTAAGCTGTTGCAAAATCTGGCTTGCC
CGTTCCAAGTTCGGAGTTGGATCATGTGGCTCGAGCGAAGGCTTGGGCTTCATGGCTCCTAGAGCAGAGGGTAATGCGTTAGGCTGGCTTCACAGAGCTG
CGAATACTTCTCGCTTCGAACAGTGGAAGGATAACAAGTCGGTGCTCTCTTGGCCCATAATAACCAGCCTGGCTCCTTCTAATGGACTCCCACTTTTTTT
TTTCCTTTTTTAAAACTGTTTTGAAGATTGGCTCGATTATTTTTATGATTTTTATTTTTTATGGTAAAGCTCGTAATAAAAAAAATAAATAAATAGTTAA
TTTTCATGCACCGATTGAGATATACATTAAATCCTTAAGCACAATGATTATGACTGTGTTCCTATATCGTAAGGTGCAACACATTAGTAGTTTGGCATAA
CTTTAGACTTAACCACACTTGAAAGATTATCGACGGAGGCTTTTGGTGGGGGGTGGTAGAAGATTCATCTTGGAAATGGTGGCTCCGGTTGGAGTGGGAC
TCATTTACTAAGTTGTTGGCAACAAAAGGGAAAACTGAATTTGAAAGATTAAACACTATGGATCTACGGATGATTTGATGATGCAAAATTTTGCCTAAAA
AATCGACCGATGTTGCGGAAGTGTTTGGTGGATGAGTCAGCAGTAGTACCATTAGAGGATATTCAGGTTGATAGCAACCTGAATTATATCGAGAGACCAG
TTGCAATCTTAGATCGGAAGACGAAGACCCTGAGGAACAAGGTGGTTCAGTTAGTAAAGGTGCAGTGGCAGCACCGAAAGGGTTCAGAGTGGACATGGGA
AACCGAGGGGGAGATGAGGGAGCATTATCCAGAATTATTTTTGGATTCAACAGCAACAGCCTTCGAGGATGAAGCCTAAGATAAGTGGGAGAGAGTTGTA
ACACCCCATTTCTGGATTTTGGTGCATTTTGGGGGTTAGAAGAAGAAGAGAGAAAAGGGGTATTCAAAGAGAGCAAAGAGGATCCGAGTTTCTGGTCACA
TTTCAGTTCCCATTAAGTCGGGGAGTTCCGGAGCAGCAGTCAGCCAGTTTCAGATTTAGCATCTCAGCAGCCAATGTTACGAGGTGAGTTTTCCTTCCAG
TAGGAACTGGTCTACGACCACAATGCCGAATCGTTTAGTTAGCAGTAGTTCCAGACTTCGGTCCGATGCAGTAGTTCAGTG