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Detailed information on CNT30306637


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671301Triticum aestivumSetaria viridis22.6655.8485.71196forward
CNT30192172Triticum aestivumSecale cereale36.6559.8193.06317forward
CNT30226858Triticum aestivumHordeum vulgare30.2993.2495.8262forward
CNT30589645Triticum aestivumMusa acuminata13.5321.5984.62117forward
CNT30553292Triticum aestivumOryza glaberrima24.3929.0686.73211forward
CNT30248153Triticum aestivumAvena sativa17.823.0284.42154forward
CNT30365845Triticum aestivumSorghum bicolor15.3828.385.71133forward
CNT30105270Triticum aestivumOryza longistaminata13.1821.9785.09114forward
CNT30101038Triticum aestivumOryza rufipogon23.8231.586.89206forward

Expression of CNT30306637

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MTSIDHKPVKHARTSEGAHANAWHMNCNRKNIRMVRAYDMQTGYE*

>peptide 2 (32 aa)
VELTQLEVLNKFFIPGTCTSMYILLQICKSCI*

>peptide 3 (60 aa)
MYKYVYPFTNMQIMHLDTITGYNDIDRSQACQARTHERGSPCKRLAYELQQKKHTYGARL*

>peptide 4 (51 aa)
MYNIHPWMDGSDGAGEVGGALLAALVEEEGQMGQVKLAGHFLPHWLRRRVR*

>peptide 5 (86 aa)
MGTLSLMPRMLALMAVQRHTAASRSASPPRSGQHSSFAGTPILSFSRFNTLAHTPSFSVLIGQLPPPVGGTIGGGRIGGVGTTGGQ*

Sequence

>CNT30306637
GGTCGAGTTAACTCAACTTGAAGTGTTGAACAAATTTTTTATTCCAGGTACATGTACAAGTATGTATATCCTTTTACAAATATGCAAATCATGCATTTAG
ATACCATAACGGGATACAATGACATCGATCGATCACAAGCCTGTCAAGCACGCACGCACGAGCGAGGGAGCCCATGCAAACGCCTGGCATATGAACTGCA
ACAGAAAAAACATACGTATGGTGCGCGCTTATGACATGCAAACTGGTTACGAGTAGAACGATTATGCATGTATAATATTCATCCATGGATGGATGGATCA
GATGGGGCAGGTGAAGTTGGCGGGGCACTTCTTGCCGCACTGGTTGAGGAGGAGGGTCAGATGGGGCAGGTGAAGTTGGCGGGGCACTTCTTGCCGCACT
GGTTGAGGAGGAGGGTCAGGTGAAGTTGGCGGGGCACTTCTTGCCGCACTGGTTGAGGAGGAGGGTCAGGTCGATGGGCACGTTGAGCTTGATGCCGAGA
ATGTTGGCCCTGATGGCGGTGCAGAGGCACACCGCGGCGTCGAGGTCGGCGAGCCCGCCCAGGAGCGGGCAACACTCCTCGTTCGCCGGCACGCCGATCT
TGAGCTTCAGCAGGTTCAACACGTTGGCGCACACACCCAGCTTCAGCGTGTTGATCGGGCAGCTGCCCCCGCCGGTCGGTGGCACGATTGGCGGTGGGCG
GATCGGCGGGGTAGGGACTACCGGTGGGCAGTAGGGTCCGCAGCCCTGCACGGTGGCGAGGAGGACCAGGTTCAGGGCGAGGAAAAGAGCAAGCTTGGAG
GGCGCCATTGCTCTTACTGGTTTGTGGCTAAGCTTGGTAGGCTTTGCTAGCTCGGGATGGTTTTC