CANTATAdb - search

Detailed information on CNT30553292

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30306637	Oryza glaberrima	Triticum aestivum	29.06	24.39	86.73	211	forward
CNT30596851	Oryza glaberrima	Oryza meridionalis	77.55	70.38	89.52	563	forward
CNT30101038	Oryza glaberrima	Oryza rufipogon	87.33	96.94	94.64	634	forward
CNT30116248	Oryza glaberrima	Oryza nivara	91.46	74.11	94.88	664	forward

Expression of CNT30553292

Peptides detected in this lncRNA

>peptide 1 (57 aa)
ELASTVRVELTGMQKRRDAVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (90 aa)
MGRLRSTGTLMLMPRTLALMAVQRQTAASRSTSPPSSGQHSSLAGTPTLSLSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30553292
AGAGCTAGCTAGTACAGTACGTGTAGAATTAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAA
TTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCA
TTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGG
CCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGG
AGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTCGACGGGGACGTTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGT
GCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGCCCCCCCAGCAGCGGGCAGCACTCCTCGCTCGCCGGCACCCCCACCTTGAGCTTGAGCAGGTTGAGC
ACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGG
GGCAGTAGGGCTCGCATGCCTGCACT