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Detailed information on CNT30583025


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303822Echinochloa crusgalliTriticum aestivum44.8366.0683.61360forward
CNT30595683Echinochloa crusgalliOryza meridionalis44.7127.6883.57359forward

Expression of CNT30583025

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MASMASLPFLISLSLSSFISFSVLPNPSGLKSGPPG*

>peptide 2 (45 aa)
MNTIMHDATRLKPTVHQPAASMHMIEQRHIIIMYVSLPLHSNIMQ*

Sequence

>CNT30583025
TGTCTCAATTAACAGGATCGATTACTAATTTGTTACAAGCAGCTAGCGTGCAGGCCGGCCAGCGATATATATGAATACAATCATGCATGATGCAACACGC
CTCAAACCCACTGTCCATCAGCCAGCAGCCAGCATGCATATGATCGAACAACGACACATCATCATCATGTACGTCTCGCTCCCACTACACAGCAATATAA
TGCAATAATCCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACTGGGTCTGCCAGGTGGTCTAGCAGGTTCTGGAACGGGCCGACGCCGGTG
ACGAGGCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCCGTCTTGC
CGAACCCTAGCGGGTTGAAGAGCGGGCCGCCGGGGTAGGACGGGCCGAGGAAGTACTGCTTGCCCATGGACCCCGGGTTGTACCAGTCCTGGAGGCGGCG
GTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTCGTAGGTGCCCGCCGGCGGGATCACGCCCGTCTTG
AACCACGGCAGCGCCGTCTCCGCCGGGATGATGCCCAGCTTGCCGAAGATCTCGGGGGCGATGGCGCCGAACGCGCCGAGCATGGCGAACCGCCCGTTGA
TCACCTCGCCGTAGGCCAGCCACTTGGGCTCGATGAAGCCGCCGGTGCCCTCGGGGTCGGACAGGCCAAGCGGGTCGAAACCGAAGTCGCCGGGAAGCCT
GCC