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Detailed information on CNT30292894


BLAST search results

BLAST vs Swiss-Prot:
sp|A6XMY9|METK1_TRIMO, E-value = 2e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712616Triticum aestivumGlycine max27.0519.0787.74155forward
CNT30158121Triticum aestivumPistacia vera31.2428.6488.27179forward
CNT30638840Triticum aestivumCapsicum annuum2617.4589.93149forward
CNT30144304Triticum aestivumMedicago truncatula39.4435.1584.96226forward
CNT30624603Triticum aestivumDaucus carota41.5436.0686.13238forward
CNT30358838Triticum aestivumLactuca sativa29.1424.4282.63167forward
CNT30429132Triticum aestivumPapaver somniferum42.7615.4582.45245forward
CNT30570674Triticum aestivumVitis vinifera50.9630.9384.59292forward
CNT30113329Triticum aestivumFicus carica26.8814.390.91154forward

Expression of CNT30292894

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MIPWSPAPISSGRLVKCPCTPWAMSGDCCSMLTSTLHRSASRPTSSEM

>peptide 2 (78 aa)
MTKRPDGFKWNMVFSSRYFSGITGLMTCSLRYSTVTWVLPSGLSQAQVPFLRTSVRRAPSLVASTWLRGMSSGVSSVA*

>peptide 3 (64 aa)
MAEGHELRGLIGGIAKHDTLVTSTNILRALGEMSVHTLGNVRRLLLYVDKHLAPVSIKANIIRDE

>peptide 4 (66 aa)
AACKTASNDALGSLPGNVGATAVNLSWVLAGESTTSVCSPATIGVDDDLATSKTSITMRATNDKAA*

Sequence

>CNT30292894
GCGGCGTGCAAGACCGCTAGCAATGATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCGCCACTGCGGTCAACCTTAGTTGGGTCCTTGCCGGAGAAAGCA
CCACCTCCGTGTGCTCCCCAGCCACCATAGGTGTCGATGATGATCTTGCGACCAGTAAGACCAGCATCACCATGAGGGCCACCAATGACAAAGCGGCCTG
ATGGATTCAAGTGGAATATGGTCTTCTCGTCCAGGTACTTCTCAGGGATCACCGGCTTGATGACATGCTCCTTGAGGTATTCAACCGTGACCTGGGTTTT
GCCATCAGGCCTTAGCCAGGCACAAGTGCCATTCTTGCGGACTTCAGTGAGGCGGGCACCCAGCTTGGTGGCAAGCACATGGCTGAGGGGCATGAGCTCA
GGGGTCTCATCGGTGGCATAGCCAAACATGATACCCTGGTCACCAGCACCAATATCCTCAGGGCGCTTGGTGAAATGTCCGTGCACACCCTGGGCAATGT
CAGGAGACTGCTGCTCTATGTTGACAAGCACCTTGCACCGGTCAGCATCAAGGCCAACATCATCAGAGATGAA