CANTATAdb - search

Detailed information on CNT30680746

BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692202	Triticum urartu	Oryza sativa	50.19	75.63	91.24	388	forward
CNT30676230	Triticum urartu	Setaria viridis	50.71	58.95	89.29	392	forward
CNT30524159	Triticum urartu	Setaria italica	50.71	43.7	89.54	392	forward
CNT30248696	Triticum urartu	Avena sativa	51.23	28.35	94.7	396	forward
CNT30116351	Triticum urartu	Oryza nivara	50.71	44	91.33	392	forward

Expression of CNT30680746

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MWCLLPRKPSCPPARMLHSIQQYSSAASRSL*

>peptide 2 (40 aa)
MPTPGASLSNAKDLRLRYMSWSCFSSVHDAFSTAKFTFDE*

>peptide 3 (97 aa)
MWHLLLLEQAQTSCVSLACLPLEHHCRMQKICGSGTCPGAASHLSMMHSPLLSSHSTNKSLMHLRRSLLPPLLPRHRAPLPAPGHACAHSSSQLAHLV

Sequence

>CNT30680746
GTTCACCGGTCAATTCCTTCGATCTTGTCTTCAACCTCCGAGTAGAGCTCCCTGAGCCTTTCCAAGTTATCCTCTGATGTCTCCCAGTAGCCTCTGCCAT
TTGCTTCTAGGAAGGTTTGAAGCAGCTTCCTGAACGAATTGGGATTTGTGTCCATCAGCCTCTTCCTCATCTCTTCATCTTCGATGAATGTGGTGTTTGC
TTCCTCGTAAACCCAGTTGTCCACCTGCCCGGATGTTGCACTCCATCCAACAGTATTCGTCAGCCGCTTCTCGATCTCTCTAACTCCCTCATAGCCACTC
TTCATCATCCCCTCGTACCACCTAGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTCTCCGACAATGTCCGCACCTGTGCATTTGCTGTGCCCT
TGCACCAGCTTCGTCGGGTCTGAGTCGAAGTAGTGGCTGACATCTGTCAGTGAGATCTCCGAGGAGTCCAGGTTTTGGAATGTGGCATCTGCTGTTGCTA
GAGCAAGCTCAAACGTCTTGCGTTTCTCTAGCATGCCTACCCCTGGAGCATCACTGTCGAATGCAAAAGATTTGCGGCTCAGGTACATGTCCTGGAGCTG
CTTCTCATCTGTCCATGATGCATTCTCCACTGCTAAGTTCACATTCGACGAATAAGAGCCTGATGCATTTGAGAAGATCCTTGTTGCCGCCTCTCTTACC
GAGACACCGAGCTCCTCTGCCTGCTCCTGGGCATGCTTGCGCACATAGTTCATCTCAATTGGCTCATCTAGTT