CANTATAdb - search

Detailed information on CNT3017375

BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 6e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692202	Zea mays	Oryza sativa	31.06	53.22	84.25	273	forward
CNT30676844	Zea mays	Setaria viridis	40.96	55.9	85.28	360	forward
CNT30523916	Zea mays	Setaria italica	35.61	47.71	87.54	313	forward
CNT30378440	Zea mays	Arabidopsis thaliana	13.88	41.92	81.15	122	forward
CNT30179310	Zea mays	Secale cereale	11.95	32.51	85.71	105	forward
CNT30538066	Zea mays	Brassica napus	17.97	29.42	81.65	158	forward
CNT30248696	Zea mays	Avena sativa	38.68	24.34	83.82	340	forward
CNT30260882	Zea mays	Brassica rapa	17.97	24.31	80.38	158	forward
CNT30681154	Zea mays	Triticum urartu	37.88	43.87	84.08	333	forward
CNT30571520	Zea mays	Vitis vinifera	16.5	25.39	82.07	145	forward
CNT30147901	Zea mays	Brachypodium distachyon	16.95	53.21	92.62	149	forward
CNT30116351	Zea mays	Oryza nivara	31.06	30.64	84.25	273	forward
CNT30551403	Zea mays	Oryza brachyantha	31.97	49.73	83.27	281	forward
CNT3064891	Zea mays	Selaginella moellendorffii	8.42	22.49	89.19	74	forward

Expression of CNT3017375

Peptides detected in this lncRNA

>peptide 1 (58 aa)
TFYIYKSHTQTLYKSPNEAEEFQARYGLNAGTDRPTDLANQFTCQSPQSCLQPPNRAP*

>peptide 2 (65 aa)
MTRSPPPGSRWTSRSLMRSRTPLSPPPLATRRAPPPAPGRACARSSSLLARPVRPPSSLPCPAGSS

>peptide 3 (38 aa)
MLEPIGRPIWQINLPVNPLNLVFNLRIELPEPVQVLLR*

>peptide 4 (40 aa)
MPAPGASLSNAKDLRLRYMSWSCFSSVHDAFSTARFTLDE*

Sequence

>CNT3017375
CAACTTTTTATATATATAAATCACACACCCAGACATTGTACAAGAGTCCCAATGAGGCAGAAGAGTTCCAAGCTCGTTATGGGTTGAATGCTGGAACCGA
TCGGCCGACCGATCTGGCAAATCAATTTACCTGTCAATCCCCTCAATCTTGTCTTCAACCTCCGAATAGAGCTCCCTGAGCCTGTCCAGGTTCTCCTCCG
TTGAAGGTCTGCACCAACTTCCTGAACGAATTGGGGTTGGTGTCCATGAGCCTCTTCCTCATCGCCTCGTCCTCGATGAACGTGGAGTTGGCCTCCTCGT
AGACCCAGTTGTCGACCTGCCCAGACGTGGCGCTCCACCCGACGGTGTTGGTGAGCCGCTTCTCGATCTCCCTGACCCCCTCGTACCCGCTCTTCATCAT
CCCCTCGTACCACTTGGGGTTCAGCAGCTTGGTCCTCGCGTCGAGGCGCACCGTCTCCGACAGCGTCCTCACCTGGGCGTTCGCCGTGGTGTCGAAGTAG
TGGCTCACGTCCGTCAGCGAGATCTCCGACGAGTCGAGGTTCTGGAACGTGGCGTCCGCCGTCGCCAGGGCGAGCTCGAACGCCTTGCGCTTCTCCTTCA
TGCCTGCCCCAGGGGCGTCGCTGTCGAACGCGAAGGACTTGCGGCTCAGGTACATGTCCTGGAGCTGCTTCTCGTCGGTCCATGACGCGTTCTCCACCGC
CAGGTTCACGTTGGACGAGTAGGAGCCTGATGCGTTCGAGAACACCCTTGTCGCCGCCTCCCTTAGCGACACGCCGAGCTCCTCCGCCTGCTCCTGGGCG
TGCTTGCGCACGTAGTTCATCTCTGCTGGCTCGTCCAGTTCGGCCACCATCTTCACTGCCCTGTCCAGCAGGTTCATCT