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Detailed information on CNT30147901


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692202Brachypodium distachyonOryza sativa38.9321.2586.24109forward
CNT30676844Brachypodium distachyonSetaria viridis51.7922.5282.76145forward
CNT30523832Brachypodium distachyonSetaria italica51.7919.8482.76145forward
CNT30248696Brachypodium distachyonAvena sativa39.297.8789.09110forward
CNT3017375Brachypodium distachyonZea mays53.2116.9592.62149forward
CNT30681154Brachypodium distachyonTriticum urartu53.9319.8985.43151forward
CNT30366407Brachypodium distachyonSorghum bicolor21.076.0293.2259forward
CNT30116351Brachypodium distachyonOryza nivara39.6412.4686.49111forward
CNT30551403Brachypodium distachyonOryza brachyantha29.2914.5187.882forward

Expression of CNT30147901

Peptides detected in this lncRNA

>peptide 1 (91 aa)
LKESSAVNPFDLVFNLGVELPEPLQVILGGVPVPPAIGLEEGRVGLLVDPVVHLTGGGAPADGVGQPLLDLPHPLVPALHHPFVPSRVQQLG

Sequence

>CNT30147901
TGCTGAAAGAAAGCTCAGCGGTCAATCCCTTCGATCTTGTCTTCAACCTCGGAGTAGAGCTCCCTGAGCCTCTCCAGGTTATCCTCGGAGGTGTCCCAGT
ACCCCCTGCCATTGGCCTCGAGGAAGGTCGTGTTGGCCTCCTCGTAGACCCAGTTGTCCACCTGACCGGAGGTGGCGCTCCAGCCGACGGTGTTGGTCAG
CCGCTTCTCGATCTCCCTCACCCCCTCGTACCCGCTCTTCATCATCCCTTCGTACCATCTAGGGTTCAGCAGCTTGGTCC