Detailed information on CNT30242448


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 4e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515312Avena sativaJuglans regia33.0211.2582.39176forward
CNT30700663Avena sativaQuercus lobata32.0832.2680.7171forward
CNT30266710Avena sativaChenopodium quinoa34.921.7582.8186forward
CNT30524993Avena sativaPhaseolus vulgaris39.7718.4882.08212forward
CNT30221070Avena sativaHordeum vulgare39.2190.0994.74209forward
CNT30237252Avena sativaBrassica oleracea42.7831.2878.95228forward
CNT30147240Avena sativaMedicago truncatula15.5722.4984.3483forward
CNT30597992Avena sativaFraxinus excelsior23.8336.3982.68127forward
CNT30718209Avena sativaMalus domestica golden37.5214.8681.5200forward
CNT30626592Avena sativaDaucus carota21.212.8382.3113forward
CNT30355286Avena sativaLactuca sativa31.8928.0181.18170forward
CNT30319471Avena sativaAsparagus officinalis15.9528.5288.2485forward
CNT3066249Avena sativaSelaginella moellendorffii22.8921.981.97122forward

Expression of CNT30242448

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVGHWFAVPVPLTSMYVLLWISSKVSLLGAPSALA

>peptide 2 (38 aa)
LVTLRVMLPVDDEAFLTFSLASSSSSPLPPAGSATALS*

Sequence

>CNT30242448
CTTGGTAACGCTGAGGGTGATGTTGCCCGTGGACGATGAGGCGTTCTTGACGTTCTCCTTGGCGAGCTCCTCCTCGTCTCCCCTTCCTCCGGCGGGCAGC
GCCACGGCGTTGTCGTAGCCAGTAGAGCCACCACGGCCCTTTGGGTCGAGGAAAGAGGAGCCCCTGTAGCTGGGCACGAGGAATGGCCCGCTGAAGCTCT
CGGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAGGAATGGCACGCGCTCGCCTCCAGGGAGCTGCACGGTGACGGCGGCGTAGTCGATGCCGTC
CTTCTCCTCGAACTTGAGGGTTCCGTCGGCGCCGACCTCCAGGGGGCCCTCCATCTCGTCGAGGGTGTAGGTGAGGCGGGTCATGAGCTTGGTCTTCTGG
AAGGGAAGGTGTCGACGCCGCCGTCGATGGTAGGGCACTGGTTTGCCGTGCCGGTACCCTTGACCTCCATGTACGTCTTGCTCTGGATCTCGTCGAAGGT
GAGCCTCTTGGGCGCTCCCTCGGCGCTCGCACC