Detailed information on CNT30223727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522288Hordeum vulgareSetaria italica21.3410.2887.83115forward
CNT30185854Hordeum vulgareSecale cereale30.6121.3594.55165forward
CNT30295069Hordeum vulgareTriticum aestivum30.6119.8391.52165forward
CNT30390919Hordeum vulgareTriticum turgidum30.6126.491.52165forward
CNT30662943Hordeum vulgareTriticum dicoccoides30.6127.4191.52165forward
CNT30142872Hordeum vulgareLolium perenne21.7115.7786.32117forward
CNT30683966Hordeum vulgareTriticum urartu30.6130.6191.52165forward
CNT30721395Hordeum vulgareTriticum spelta28.3931.8791.5153forward
CNT30352513Hordeum vulgareEragrostis tef21.891087.29118forward
CNT30579664Hordeum vulgareEchinochloa crusgalli21.8911.3584.75118forward

Expression of CNT30223727

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MASSQIEVVDRAPPSSSSLAVVAPGVEDAPPHAAAARRRRRRRRRRHRRGRGRRHRLRRLHRLPRSCTPT

Sequence

>CNT30223727
TTTAGGTTGTACGTACTTTTTATTAAAATAAAGGTATCAGAAAAAGAAAGAACTTGCTCTGAGGCTGTTATTATCTTACCATAGTCGGTTAAACATTGAG
AAGACCACACCACCCACACGAGAGAATTTACACATGGAGCGCACACAAAGTACACACATACACCCATCACTCGCTAGCATGCGGCGAGCAAAGAGCAAAC
TGAGGTAACAAAAGAAAGTTACAAGCACTAGTATAGTAGTACTGCTACTAAGCTTAGGAGAAACTACATGCAGCCTCGGACAGCAACGTACGTACGCAGG
ATTTAGATAACCAAAAGAGCAGCAAACATGGCGTCGTCCCAGATCGAAGTTGTCGATCGAGCACCCCCGTCTTCCTCTTCTTTAGCGGTGGTTGCTCCCG
GGGTGGAAGACGCTCCGCCACACGCTGCCGCCGCGCGGCGGCGTCGTCGACGACGACGACGGCGTCACCGGCGTGGTCGGGGTCGTCGGCATCGACTGCG
ACGGCTTCATCGCCTCCCCCGCAGCTGCACCCCCACCAA