« Back to Lolium perenne search


Detailed information on CNT30142872


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297131Lolium perenneTriticum aestivum16.0422.5489.08119forward
CNT30223727Lolium perenneHordeum vulgare15.7721.7186.32117forward
CNT30392434Lolium perenneTriticum turgidum16.5821.4387.8123forward
CNT30683966Lolium perenneTriticum urartu16.1722.2689.17120forward
CNT30721395Lolium perenneTriticum spelta16.172589.17120forward

Expression of CNT30142872

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLLVSYIITNEKKAETCSQPVINCFAIGNYLSKH*

>peptide 2 (30 aa)
WHINLYIPRYCSTSFVTARPYVARFIHYYQ*

>peptide 3 (46 aa)
AHKFVYTSILFNKFCYRPPLCCSFHTLLPMKRKRKLALSLLLIVLR*

>peptide 4 (42 aa)
MNSWKHYSYAKSSSYALLISFRLFRCFCSLCLHELTYVNYLC*

Sequence

>CNT30142872
TGGCACATAAATTTGTATATACCTCGATATTGTTCAACAAGTTTTGTTACCGCCCGCCCTTATGTTGCTCGTTTCATACATTATTACCAATGAAAAGAAA
GCGGAAACTTGCTCTCAGCCTGTTATTAATTGTTTTGCGATAGGTAACTATCTATCTAAACATTGAAGAGATCACACACGCACGCACCGGCACGGGTAGT
ATTTACAGATGGAACGTGCACACACATACACGCATCAAAGTAGTACAGAGGAGTAGCGGAAGTAGTACTGAAGCTTAGGACAAACAAACAACACGCAGCC
TCGGACTGCAACGCAGGAGCAGGAACTAGGAAGGATTAGATAACCAAAAGGAGCAGCAAACATGGCGTCAGAGAGCTCTTCTTCTCCGTCCACGGCTCTG
ATTTAGCGGTGGTTGCTCCCGGGGTGGAAGACGCCCCTCCATACGTTGCCACCGCGCGGCGGCGTCGCTGAGGACGGCGTCACCGGGGTGGTCGGGGTCG
TCGGAATCGACTTACTTCCCTCGCCTGTAGCTAGTGCTACTCCAGGAAAGATCCATGAAAATCAGCCGTCAGTTGAACAGAACAGAGCAGAACATAACAC
CGTATGAATTCTTGGAAACACTACTCTTACGCTAAGTCTAGTTCTTACGCTCTTCTTATTAGTTTCAGGTTATTTCGCTGCTTCTGCAGCCTCTGCTTAC
ATGAACTAACATATGTAAACTACCTGTGTTGATGGCCAGAGG