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Detailed information on CNT30579664


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677580Echinochloa crusgalliSetaria viridis7.636.7410079forward
CNT30297131Echinochloa crusgalliTriticum aestivum10.3820.4587.04108forward
CNT30223727Echinochloa crusgalliHordeum vulgare11.3521.8984.75118forward
CNT301701Echinochloa crusgalliZea mays14.2322.2989.19148forward
CNT30683966Echinochloa crusgalliTriticum urartu10.3820.0487.04108forward
CNT30721395Echinochloa crusgalliTriticum spelta10.3822.587.04108forward

Expression of CNT30579664

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRKASTQNHIQRLPSLARHTTLSGRAEADHVAVIKHYSLDINNKDMTK*

Sequence

>CNT30579664
AATTAAGTTGAGCTGACGTGTGGTAACGGTCGAACCCGTCTCCATTACCACTGTGATTTGATCACAAAGTCTCTGATTCGTGATCTCTGCGCTGGGAAAA
TATTTTAAGGTGATATGTAATTACACACGCATACATTACACTGGAAAAATATTTACAGATGAGAAAAGCTAGTACACAGAACCACATACAAAGGTTGCCG
TCACTGGCACGCCACACCACACTTAGCGGCCGAGCGGAAGCAGACCATGTAGCAGTAATTAAGCATTACTCACTCGACATCAATAACAAAGACATGACAA
AATAAGCGGCAGAAGGTCATTAGCCTCGGACAGCAACGCAGCAGCAGTGGCGTCCGTTTTAGATAACCATAAGGACCAGCAAACACGGCCTGACAGAGAC
GCCGGGCCCTTCCTCGCTCATCAACCTCGTCGATCTCCTCCGATCAGATCTAGCGGTGGTTGCTCCCCGGGTGGAACACGCTGCGCCACACGTTGCCGGC
GCCGCGCGGCGTCGTCGACGTCGGGGTCACCGGCGTCGTCGGGGTCGACGGCATCGACTGCGCCCGCTTGTAGCTGCTGCCGGCGGCGGCGCTTCCGTCC
GCATCTTGAAGAACACAAATCACGTCCGCAGAGCGTTAGTTGGTGAACAAACCAATTATTATATCCTAATTCCTAACAGTCTAACGCACGGTAATTTTTA
TATTTTGTAGCATGTTTTATTAGTTAAGAACAGATAATTTGTGCATATTGTTGCTATACGTGCTTCATGTCTAGCTAGTTCGAAATCGTTGCTAGTGAGA
ACTAGCGTCGTTCCACACCAGCGAGTATACCTTTTTCGATGACGAGGGGGCGGGAGGTTGTGGCCTTGCGGAGCTTCTCGAGCCCCGTCTCCGGGTGAGG
CCCGGCCACCACGTCGTCCCACAGCTTCTCCAGCATCTTCCTCTCCTTCCCTCTCTCTAGCTCCGGCGAAGGTTACTCGCTGCACTCCCCAAACGTCCCT
ACCAAAAAAGAGCACTACACCACCAGGAAAGACCGTCCGG