« Back to Eragrostis tef search


Detailed information on CNT30352513


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297131Eragrostis tefTriticum aestivum9.6621.5985.96114forward
CNT30223727Eragrostis tefHordeum vulgare1021.8987.29118forward
CNT30683966Eragrostis tefTriticum urartu9.6621.1587.72114forward
CNT30721395Eragrostis tefTriticum spelta9.6623.7587.72114forward

Expression of CNT30352513

Peptides detected in this lncRNA

>peptide 1 (44 aa)
PTQVVIPSQKKNTQVVISHKIFTPVRHGNIFANKSSCTHITRQS*

>peptide 2 (38 aa)
MTASPAWSGWSASTAPACSCRRRALRPHLQKVPQPDDS*

>peptide 3 (32 aa)
NTSRNSLAKEKHTSRNITQNFYTRTTRQYFCK*

Sequence

>CNT30352513
CCAACACAAGTCGTAATTCCCTCGCAAAAGAAAAACACACAAGTCGTAATATCACACAAAATTTTTACACCCGTACGACACGGCAATATTTTTGCAAATA
AAAGCAGCTGTACACACATCACACGCCAGTCGTGAGCACGTAGCATCCAGGCTAACAAAACTGACCAAGTAGCAGCACTACTAGCTAACAGTATCGGAGT
AGTACTGGTACTCCAACCACCATAAAAGACAAATTAAACAGGAACAGCGACGTTTTAATTAACACGTGGCCCCGGAAATCAACCCAGTACTGAGTTTTAG
ATAACCACAAGGACCGGCAAACAAGGCCTGACAGAGACAGGCCAACACACAACAGGCTTCGTCATCCCCCGATCTAGCGGTGGTTGCTCCCCGGGTGGAA
CACGCTGCGCCACACATTGTTGCCGCCGCGCGGCGTGGAGGACGACGATGACGGCGTCACCGGCGTGGTCGGGGTGGTCGGCATCGACTGCGCCCGCTTG
TAGCTGCCGGCGACGGGCCCTCCGTCCACATCTTCAAAAAGTACCGCAGCCAGATGACAGTTAGAGAACTGTGAGCACACAGCATACTCTGCATATTAGG
TTAGGTGGTGTTTACATACCCTAACTAGTTTTAGTCAGATGACTAGAGACTAAAACTTTTTAGCTTCTTCTTTTTCTATGACTAATTTTAGTCTCTTTTA
ATTCTCCTTGTTTAGAACTTTAGTCCCTAAAAATAACTAAAATTAATCAAGTCTAGTCTCTAGTCAGAGTATATATACACCACTCTAGTTTTTATTTAGA
TGATCTCTTAATGCCTTGATGTGGCTAATGAATTCATTACGAGGCCCCAGTCTAGATAGATCTAGGTAATCACTAAGATGAGAACTCGAGTTAAGATCAG
TAGTTGGGCATGCTCCATCGATCTTGAGTTCGTTTGTTGTGCTACTGACGAAGCTATTAGCTAATACCCACCTTTGTTGATGACGAGCGGGCGGGAGGTG
GTGGCCTTGCGGAGCTTCTCGAGGCCGGTCTCAGGGTGAGGCCCCGCCACCACGTCGTCCCACAGCTTCTCCAGCATCTTCAACCTCGATCGAGATCACG
ATTATGCTCTTCTCGCAAGGCACAAAGCACTGAAAGCACCGCAGTACTAATTAAGCTAAGGGTGTCCTGGCTAAGCTGGC