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Detailed information on CNT30220359


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW6|ATPA_SACOF, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Hordeum vulgareOryza sativa83.3515.494.72871forward
CNT30201764Hordeum vulgarePisum sativum61.9186.1583.15647forward
CNT3095993Hordeum vulgareSolanum tuberosum60.5715.8282.78633forward
CNT30303698Hordeum vulgareTriticum aestivum93.4963.5297.34977forward
CNT3018020Hordeum vulgareZea mays83.3521.1694.37871forward
CNT30627896Hordeum vulgareDaucus carota35.1225.0286.1367forward
CNT30364932Hordeum vulgareSorghum bicolor38.0960.2189.45398forward
CNT30371010Hordeum vulgareOryza glumipatula56.7564.8890.05593forward
CNT3057982Hordeum vulgareAmborella trichopoda37.5122.5885.71392forward
CNT30121210Hordeum vulgareCitrus clementina83.3522.3685.42871forward
CNT30103672Hordeum vulgareOryza rufipogon25.9331.0494.83271forward

Expression of CNT30220359

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MESSYYLSYGGCSLTDSYINTYYTLPFLISNCICGYCCFSSLSVLNNELSLTAPYRDHRIDSNSKCLKGFIYRTPGNSTWRRRFN*

>peptide 2 (39 aa)
MLFCIFHCESFSQSLPSPFFPGHRLTWLTAHIHSLFVLLW

>peptide 3 (34 aa)
MFEGVHIQNAWKFYLAQEIQLSEIPKLQFRLSHQ*

Sequence

>CNT30220359
TAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTAATAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCC
ATCTGTAATGGAGATTATATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCAATTATTGGTAAAGCGGTCATACTTCCTTCGCCTAAAAGA
GAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGATAAGCCTCACGGCCGGGAGGTCTTCTTAATAGAAGGGACA
TTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGTTACATAAAATACTCAGCCAGGGTTGCTCCCGTATA
AGGAGCGAGGTATTGTAATGTAGCAGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCTCCTCATGGAAAGTAGTTACTACTTGA
GCTACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACACCTTGCCCTTTTTGATTTCGAATTGTATATGTGGCTACTGCTGTTTTTCCAG
TCTGTCTGTCCTCAATAATGAACTCTCGCTGACCGCGCCCTATAGGGATCATCGAATCGATAGCAATTCTAAATGTTTGAAGGGGTTCATATACAGAACG
CCTGGAAATTCTACCTGGCGCAGGAGATTCAATTAAGCGAGATTCCGAAGCTACAATTTCGCCTCTCCCATCAATAGGTTTAGCCAGAGCATTTATAACA
CGACCCAAGTTATATACGCTCACGGGTATCTGAGAAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGATGCTAAACCATAGCTCTAACTGAGTCAA
CTTCCACAATTTCTAAGAACGATATGCTTTTTTGCATTTTCCACTGTGAAAGCTTCTCTCAATCCCTCCCTAGTCCTTTCTTTCCTGGGCACAGGCTTAC
CTGGTTGACCGCCCACATTCATTCATTGTTCGTTCTGTTGTGGAA