« Back to Amborella trichopoda search


Detailed information on CNT3057982


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XV0|ATPA_AMBTC, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201764Amborella trichopodaPisum sativum9.1621.1787.42159forward
CNT30291343Amborella trichopodaTriticum aestivum26.9631.1286.54468forward
CNT30220359Amborella trichopodaHordeum vulgare22.5837.5185.71392forward
CNT3018020Amborella trichopodaZea mays26.9611.3786.75468forward
CNT30121210Amborella trichopodaCitrus clementina26.911.9985.01467forward

Expression of CNT3057982

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKKIKCQMNYPDFRHVLIGTTLTEYQRTVIECIRAEQVIKRQYTKNHKN*

>peptide 2 (41 aa)
MEIPTLIAGRILALNRSADKKIYSSVMEITLVEMYAETSPD*

Sequence

>CNT3057982
TATGAAAATGAGATTTTATAGATTTTCTTTTATTTTATAGTTTTCTTTGTTTTCTTTTTCTTTTATAGTTATACATAGTAAAGAAATAAAATATATAATT
CTAATATAAATGAGAATGAGTAAAGTGCAGCTGGTAGGATCCAACCTATTATTGAAATAAACAACTCGCACACACTCCCTCTCCGAAAAAATTCAATACA
CCAAGCACCACACTTAGATTTATTGGATTCACTTCTGATCTCGATGAAGCTGCTCAGAATCAATTGGCAAGAGGTCAACGATTGCGCAAGTTGACCTCTT
GCCAATTGTGTAAAGGCTTCTAACTTTGCAAATTGAGGCAGTTCCAATTTTGATTTGCCACCAACTTGTTTCATAGCTTTAATTTGAGCTGCCGATTCTA
CTCTGGAAATGGAAATACCCACATTAATAGCAGGTCGGATTCTAGCATTGAATAGATCGGCAGATAAGAAGATTTATTCATCTGTAATGGAAATTACACT
AGTGGAAATGTATGCCGAAACGTCCCCAGATTGAGTCTCAACTATTGGTAAATCAATCATACCTCCTTCGCTAAAACGAGAACTTGATTTAGCGGCTCTT
TCCAAAAGTCCAGAATGCAAATAAAAAATATCTCCTGGATAAGCTTTGTGACCAGGAGGTCTTCTTAATAGAAACGACATTTGGCAATAAGCTTGTGCTT
GTTTAGAGGGATCATCATGAATTATTAAAGTATGTCGTTCACGGTACATAAAATATTCAGCCAGGGCTGCTGCTTATATGAATAGTCATAGGGCCAGTTA
GATGTCTGGCATCCAAATATGAATGTTATATATGTATCATTTGTATTTTACATATTTATCAATTAGTACTTCATTTTAGAATGGAAAAAGAAATTGAAAA
TATAATGAATTAAGGTCATGTTGATATTCTTTAATTTGTAATTCAACTTAACTAAGTTATGCTTGGGACCAGGTTTAAGTTGAGTTTGAGATTTTGTGAA
CATTAGAACTTATATATAACTCATAAAGTACCTAAGCAAGAAGAAACAACCACAAAACAAGAGAATATATGCAACAGAGTAAGACATGACCCTGAACTTG
CAGTCCAGAAATGGGTAATTAAAGAAAAGAAAGAATGAAAAAAATCAAATGTCAAATGAATTATCCAGATTTTAGACATGTGTTAATTGGAACAACACTT
ACAGAGTATCAAAGGACAGTAATAGAGTGTATACGTGCGGAACAGGTAATCAAAAGACAATACACCAAAAATCACAAAAATTGAAGACTTCTGTGAAATT
CAATCTTTGAAATGGTAGAAGAAAAATCTAAAACAGAGATTATAATAAAAAGATGATCTAATCAATGCGTAATTGTTCAATACAGTTAGAAAACTCAAAG
GAATCTACTATTATCCTGTTTCTTTATGCCAGTAAAGCAATAAAACAGTAATTAACAATGAAAAACATTATTGTTGATAGATTGCTCAATTAACCATCGA
ACATAAGCTATAACCCGACATTGAAAAGCATAATTGGTGATAGATTTATCATTCAACCATCCTATAGAACCCAACATTGAAAAATATAATTGTAAATAGA
TTTCTCAACAAGGCATTCTATAGAACCTGTCACTGAAAAACACAATTGGCCATAGATTTCTCAAACAAAATTTGCGAAGTAAGCTTCGAAATTATTAAAA
GAAACATTAAACAGGATGGTTAGGGCCTTAGCGGAG