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Detailed information on CNT30121210


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09MJ3|ATPA_CITSI, E-value = 0.0

BLAST vs NONCODE:
NONCQUT006914, E-value = 2e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Citrus clementinaOryza sativa36.2324.9585.051411forward
CNT30678565Citrus clementinaSetaria viridis4.8520.5992.06189forward
CNT30535895Citrus clementinaEucalyptus grandis4.2129.691.46164forward
CNT30703171Citrus clementinaQuercus lobata39.5112.9192.331539forward
CNT30282912Citrus clementinaChenopodium quinoa14.8954.189.83580forward
CNT30201764Citrus clementinaPisum sativum19.2810088.95751forward
CNT30506790Citrus clementinaNicotiana attenuata7.1645.8987.1279reverse complement
CNT30710758Citrus clementinaGlycine max5.1366.8991.5200forward
CNT3095993Citrus clementinaSolanum tuberosum23.2122.5988.94904forward
CNT30179302Citrus clementinaSecale cereale4.2625.7890.96166forward
CNT30291343Citrus clementinaTriticum aestivum31.8482.4585.321240forward
CNT30220359Citrus clementinaHordeum vulgare22.3683.3585.42871forward
CNT30567675Citrus clementinaActinidia chinensis5.2122.4389.16203forward
CNT3086153Citrus clementinaVigna radiata4.4478.2886.71173reverse complement
CNT30541460Citrus clementinaBrassica napus14.5820.0286.8568forward
CNT30511193Citrus clementinaSolanum lycopersicum10.4723.0286.03408forward
CNT30554216Citrus clementinaOryza glaberrima13.7181.985.58534forward
CNT30145240Citrus clementinaMedicago truncatula5.5238.6789.3215forward
CNT30660677Citrus clementinaTriticum dicoccoides13.9940.8585.14545forward
CNT30598585Citrus clementinaFraxinus excelsior13.4561.4391.98524forward
CNT3018020Citrus clementinaZea mays38.936.885.151515forward
CNT30205079Citrus clementinaHelianthus annuus14.7679.5390.78575forward
CNT30627896Citrus clementinaDaucus carota9.6825.790.98377forward
CNT30353938Citrus clementinaEragrostis tef10.7171.7783.69417forward
CNT30364932Citrus clementinaSorghum bicolor7.6344.9386.2297forward
CNT30621081Citrus clementinaCajanus cajan14.1752.8787.32552forward
CNT30371010Citrus clementinaOryza glumipatula20.6287.8682.94803forward
CNT30409854Citrus clementinaPapaver somniferum14.9287.6390.02581forward
CNT3057982Citrus clementinaAmborella trichopoda11.9926.985.01467forward
CNT30148014Citrus clementinaBrachypodium distachyon5.3974.4781.43210forward
CNT30103672Citrus clementinaOryza rufipogon7.2732.4287.63283forward
CNT30575833Citrus clementinaOryza barthii5.163082.09201forward
CNT30551824Citrus clementinaOryza brachyantha4.3469.2681.07169forward

Expression of CNT30121210

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPILALMVRKCNSLFKQLFRVPSAPCKACWKTRCRT*

>peptide 2 (75 aa)
MAPLCSSSEFRILFKILSLRLSNKSLNTPFPKKINTPSTTLRFIGFVAKISVLSPKLPANGQLTKETKESVTFFI*

>peptide 3 (62 aa)
MYPSPNHPVFYKSLFFFFFFSIPFRYHYPPGYNRNRRIHWGESLHRTKYQYLIEVRPCNLLY*

Sequence

>CNT30121210
ATAAAGTAAGAATAAGAGTGGTTTTTTATTTATAATTGTTCCTGAAGTAGAAAACGTTCCTTTTGTTCCTGAATAGCTTCTTGCAAAAGGGCTTCTGCTT
CTTCGGTGAATATCTTGGTAGAAGATATTATTTCTTGGAACTGAGGTTTATTCGTTTTTAAGTAAGTACGTAACTCAACGAGAAATTTTCTTACTTGACC
AATTTCTAATGAATCAAGATAACCATTCGTTCCTGTATAAATAGTCATTATCTGTTCTTCCACCGTGAGAGGGGCTGCTTGGGCCTGTTTGAGCAACTCA
CGTAAGCGTTGACCCCTTGCCAATTGGTTCTGAGTAGCTTTATCGAGATCAGAAGCAAATTGTGCAAAGGCTTCTAATTCTGCGAATTGTGCCAATTCCA
ATTTTAATTTGCCGGCTACTTGTTTCATAGCTTTAATTTGAGCTGCGGATCCTACTCGAGAGACGGAAATACCCACATTAATAGCGGGTCTGATTCCAGC
ATTGAATAAATCCGCGGATAAGAATATTTGCCCGTCTGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCTCCCGACTGGGTCTCAACTATT
GGTAAAGCGGTCATACTTCCTTCGCCTAACTGCGAACCTAATTTCGCGGCTCTTTCCAAAAGTCGTGAATGCAAATAAAAAACATCTCCGGGATAAGCTT
CGCGACCCGGTGGTCTTCGTAATAGAAGAGACATTTGTCGATAAGCCTGTGCTTGTTTGGAGGGATCATCATAAATGATTAAAGTGTGTCGTTCACGGTA
CATAAAATATTCAGCTAGAGCTGCGCCCGTATAAGGAGCGAGGTATTGTAACGTAGCGGGGGAATCCGCCGTTTCGGCTACCACAATAGTGTAGTCCATT
GCCCCCCTCTCCTGGAAAGTATTCACTACCTGAGCCACAGAAGATGCTTTTTGACCAATAGCTACATAAACACATATTACATTTTGCCCTTGTTGGTTGA
GAATCGTATCCGTGGCTACTGCCGTTTTACCGGTCTGTCTGTCCCCAATAATTAATTCTCGCTGACCGCGTCCGATAGGGATCATCGAATCAATAGCAAT
AAGTCCTGTTTGAAGAGGCTCATATACGGAACGTCTCGAAATAATACCCGGAGCAGGGGATTCAATTAATCGAGATTCAGAAGCTGAAATTTCACCTCGA
CCATCAATAGGTTTAGCCAGGGCATTTATAACACGACCTAAATAAGCCTCGCTTACTGGTATCTGAGCAATTTTTCCGGTTGCTTTTACAGAACTTCCTT
CTTGTATCATTAAACCGTCACCCATTAAAACAACACCAACATTAGTTGATTCCAAATTCAGAGCAATGCCTATTGTACCCTCTTCAAATTCTACTAATTC
ACCTGCCATTACTTCATCAAGACCATAAATACGGGCGATGCCGTCGCCTACTTGAAGTACGGTCCCAATATTTACAATCTTTACTTCTCTATTATATTGC
TCAATACGTTCGCGGATAATATTACTAATTTCGTCGGCTTTAATTGTTGCCATAAGTATTTCTTAATTCTTTTTTTTCTTAAAAAAAAAAAAAATAATGT
GCCTACAGTAAAAGGACTAATCCGTTATTTCTTTCATCGCTCCAAACATGCCAATATTGGCACTAATGGTACGTAAATGTAACTCCTTGTTCAAACAACT
ATTCAGAGTTCCGAGCGCTCCTTGTAAAGCTTGTTGGAAAACCCGTTGTCGGACTTGATTAATTGCTCTTTGTTGTTCAAAATGAATGGTTTCATTTTTG
TAATTTTCTAATTGATCCAAAGTCTTATAAGTTGAATTAATCAAATTGAATTTTTCTCGTTCTATCTCAGAGTATCCATTCACTCGAAACTGATCTGCTT
CTATTTCTATTTTTCGTAACCGGGCCCGGGCTTTTTCCAGCCGTTCAATGGCCCCTCTCTGCAGTTCTTCTGAATTTCGAATACTATTCAAAATCCTCAG
TTTGCGATTATCTAATAAATCACTTAACACTCCCTTTCCAAAAAAGATCAATACACCAAGCACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCG
GTATTAAGCCCGAAACTCCCGGCGAATGGCCAGTTAACCAAAGAAACGAAAGAATCGGTTACATTTTTCATATGATCTCCTCTTTTAGATAGACTAAAAA
AAAAAAATGAACTGCGTTCTTTTTTTTTTTTTTTCTACGTAATATATATTTATTTAATTTATTTGTTTTTTTAGTAATTTACCTATTTCGAAACAGGGTC
AAAAATTCGATTTCGAAATCCTTTCTTTGAATTGGCAATTGGGGATTCCCGATAAGAGGGATACTTATTAGTATTAGGGGCCGGGACTCCTGTCAATTGC
AAAACCCCTCGTTTGTTGCAGCATCACTTAAAAAGAGGGTTTCCTTTAGACTAAGAAAGGGAAAGAAAAAGGCGAACTGGTATGCCTATCCTAATTCCCC
ATCCTCAAATCAGTCCTTCCAATTGGAGGAGTTAAATCTTGATAGAATTCAAAAAAGCCAGAAACACAGATATAATAAATAAGAGAAAAAAAAATAAGTA
AATTGTAAATTGCCCTTCCTATTTCTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAATGCTACAACCAGCCCATAAATTGTTAAAGCTTCCATA
AAAGCCAGACTAAGCAATAAAGTACCTCGTATTTTTCCCTCCGCCTCGGGCTGTCTCGCGATCCCTTCTACTGCCTGGCCCGCAGCAGTACCTTGACCAA
CTCCAGGTCCAATAGAAGCAAGCCCAACAGCCAACCCAGCAGCAATAACGGAAGCGGCAGAAATCAGTGGATTCATGATAAGTCCCTCGCACTAAAATAA
AGAAAAACTAAAGAAATCGTTAATGATACAATCGTCCAATAAATTATGACTTAATTATTCCGTCACTAGGATTCGCCCAGCCGAAGTAACTAAGAACTCC
CAATTGGCGTAATAATAATATTATTATTGAACCATCAAAACTTTTTAGATATCTCTTTTTTAGTTTCGATCCACAGGCACAACACAGGATTTTTGTAAAT
CCATACGACTTTTGTTCTTCCATTTCTTTTTTCGGAACCCTTTTTTGAATTCTTCGTTCGTTTTCTTTCTTTCATCTCTTTATTTTTATTGATTCAATTC
CCAGTCAAAGCATCAAAGCAAAGACGAAATCGAACAATTTCTATTAGAATCCCTATCGAAATTCACAATAATCACAAGAGTAGGGTGGATTAGATATATC
TTTAGTTCATATATAACTAGCAATATCTAATATCCCATATACATGTCTTTCTTACAGAACGTAAACCAACTATTAATATCTTAGACTCCAAGTATTCGTA
TCTTAAAGTCAATCGTATTCTCGAACCCCTTTTAAAATTCAAAAAATACACAAGAGTTGGCATTTGATTCCATATACCTAATTATGTACCCCTCGCCGAA
TCACCCCGTTTTTTATAAATCTCTTTTTTTTTTTTTTTTTTTTTCTATTCCTTTTCGTTATCATTATCCACCAGGCTACAATCGAAATAGACGAATTCAT
TGGGGCGAATCATTGCATAGAACTAAATATCAGTATTTGATTGAGGTACGGCCATGCAATTTATTATATTAATATTCTCTTTTGGTCAATCGTTGAATTG
AAGAATTGACTAAAATCAACTAAAAGGGGAATCATTTTATAAAGCATCTTTCTTTTCTTTTTTTTTAATCACCCGCCTGTGATACTATAAGAATTTTTAT
TCAACTTATCACTCTTGGTATTTGCTATTCGAATTGAATGAACAAAAATGAACAAAACAATATAAAGAAAATATTAATTGGCGGGGAGAGGGGGG