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Detailed information on CNT30627896


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 5e-110

BLAST vs NONCODE:
NONMEST005600, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530127Daucus carotaEucalyptus grandis14.7267.7195.37216forward
CNT30703171Daucus carotaQuercus lobata25.093.0991.58368forward
CNT30196112Daucus carotaPisum sativum27.286.1888.47399forward
CNT3095993Daucus carotaSolanum tuberosum25.099.288.04368forward
CNT30300827Daucus carotaTriticum aestivum35.1145.2991.46515forward
CNT30220359Daucus carotaHordeum vulgare25.0235.1286.1367forward
CNT30391503Daucus carotaTriticum turgidum23.9970.487.5352forward
CNT30145113Daucus carotaMedicago truncatula21.2795.1292.95312forward
CNT3059907Daucus carotaArabidopsis lyrata1543.2293.64220forward
CNT30598581Daucus carotaFraxinus excelsior20.9386.9794.79307forward
CNT30605440Daucus carotaGossypium raimondii27.95100.2486.34410forward
CNT30685372Daucus carotaTriticum urartu60.2696.488.24884forward
CNT30364932Daucus carotaSorghum bicolor20.3145.0886.24298forward
CNT30360309Daucus carotaLactuca sativa37.7696.3597.11554forward
CNT30371010Daucus carotaOryza glumipatula21.6134.6883.91317forward
CNT30121210Daucus carotaCitrus clementina25.79.6890.98377forward
CNT30103672Daucus carotaOryza rufipogon14.3824.1787.68211forward

Expression of CNT30627896

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSGYDIISFFFLPEPVTFISRFIFCGFPDQTRGIPSEKLP*

>peptide 2 (42 aa)
MSITFVHNFHTKVSAVNDISPSINYTALTINYRLVESHSADT*

Sequence

>CNT30627896
CGCCCCGCCAGTTTTCTTTTATTTATTTGCATTTCAAAGGATTCCTTTTTGATCATTCAAAAATATTTGTTTATCTAAAAAAGTCTTAAATAAATAAAAA
AGGAGCAAGACCGCCTCTTGATAGAACAAGAAAGAGGTTATTGCTCCTTTTTTAATATTTCAAAAACTCGTATAGACTAAGACCCGGCCTTACCCATTTG
TAGATGGAGCTTCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCGTGCATAACTTCCATACCAAGGTTAGCGCGGTTAATGATATCAGC
CCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACCTACTACAGGCCAA
GCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTT
CTTCTTCTTGCCCGAACCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGCATACCATCAGAAAAGCTTCCTTGACCG
ATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGGAAACTAAGCTCCCACT
CACGACCCATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACGATTAATTCATAAGGACCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCA
GATTGGATAAAAGTGCAAACCTATAGCTGCAGAAGTCGGAATAATGGCACCGGAAATAATATTGTTGCCATAAAGTAGAGATCCAGAAACAGGTTCACGA
ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA
TGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATAGCAGTCATGGCGTGAATGTA
AATAAAAAACATCCCCTGGATAAGCTTCGCGACCAGGCGGTCTTCGTAATAGAAGAGACATTTGTCGATAAGCTTGTGCCTGTTTAGAGGGATCATCATA
AATTATTAAAGTGTGTCGTTTGCGGTACATAAAAAATTCCGCCAGAGCAGCGCCTGTATAAGGAGCGAGATATTGTAATGTAGCAGGAGAATCCGCCGTT
TCAGCTACCACAATAGTGTATTCCATCGCTCCCCTTTCCTGGAAATTAGTCACTACCTGAGCCACAGAAGATGCTTTTTGACCAATAGCTACATAAACAC
ATATTACATTTTGGCCTTGTTGGTTCAGAATCGTATCTGTTGCTACTGCTGTTTTACCTGTTTGTCT