Detailed information on CNT30364932


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Sorghum bicolorOryza sativa60.217.0489.95398forward
CNT30703171Sorghum bicolorQuercus lobata45.082.586.24298forward
CNT30201763Sorghum bicolorPisum sativum45.0854.1885.91298forward
CNT3095993Sorghum bicolorSolanum tuberosum41.66.8785.45275forward
CNT30303698Sorghum bicolorTriticum aestivum60.2125.8890.7398forward
CNT30220359Sorghum bicolorHordeum vulgare60.2138.0988.94398forward
CNT3018020Sorghum bicolorZea mays60.219.6792.21398forward
CNT30627896Sorghum bicolorDaucus carota45.0820.3186.24298forward
CNT30121210Sorghum bicolorCitrus clementina44.937.6386.2297forward
CNT30103672Sorghum bicolorOryza rufipogon42.6632.387.23282forward

Expression of CNT30364932

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MALFVESSYYLSHGACSLTDSYINTYYILPFLIENCIFLIENCICGYCCFASLCVPNN*

>peptide 2 (31 aa)
QHILPSNSGLAHIRTSHETTTGPGRHVRTVQ*

Sequence

>CNT30364932
CAGCACATTCTCCCATCTAACAGCGGATTAGCGCACATCAGGACGTCTCACGAGACGACCACTGGTCCAGGGAGACACGTACGTACAGTACAGTAATGAG
TGGACTAAAGAAATGCAGTAGGGTACAATACAGGTCTTGTAGCAAAGAAAAATTTCGTGACACTGTAGCATTTTAGTTTGTTTGCGAAAACTATTGCTCA
ATCATAAACTCTTCTTAATACAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAAGTATACGGTTCGCGGTACATA
AAATATTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGATATTGTAATGTAGCGGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCC
TCTTCGTGGAAAGTAGTTACTACTTGAGCCACGGAGCATGCTCTTTGACCGATAGCTACATAAACACATATTACATCTTGCCCTTTTTGATTGAGAATTG
TATCTTTTTGATTGAGAATTGTATCTGTGGCTACTGCTGTTTTGCCAGTCTGTGTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATGGGGATCAT
CGAATATTCGCCACGTCAATTTGGAACAAACTGTGTAATTAGTTTTTATTTTTGTCTATAT