« Back to Oryza rufipogon search


Detailed information on CNT30103672


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW6|ATPA_SACOF, E-value = 2e-54

BLAST vs NONCODE:
NONORUT001152, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Oryza rufipogonOryza sativa55.338.5499.79483forward
CNT30678068Oryza rufipogonSetaria viridis55.7830.7389.53487forward
CNT30703171Oryza rufipogonQuercus lobata32.422.3787.63283forward
CNT30201763Oryza rufipogonPisum sativum32.4251.4585.87283forward
CNT30710758Oryza rufipogonGlycine max10.8831.7785.2695forward
CNT3095993Oryza rufipogonSolanum tuberosum31.396.8586.5274forward
CNT30303698Oryza rufipogonTriticum aestivum32.4218.496.47283forward
CNT30220359Oryza rufipogonHordeum vulgare31.0425.9394.83271forward
CNT30656987Oryza rufipogonTriticum dicoccoides56.3638.1186.99492forward
CNT3018020Oryza rufipogonZea mays32.426.8795.41283forward
CNT30627896Oryza rufipogonDaucus carota24.1714.3887.68211forward
CNT30689283Oryza rufipogonTriticum urartu56.4719.4387.42493forward
CNT30364932Oryza rufipogonSorghum bicolor32.342.6687.23282forward
CNT30596381Oryza rufipogonOryza meridionalis12.4937.07100109forward
CNT30371010Oryza rufipogonOryza glumipatula32.5331.0794.72284forward
CNT30121210Oryza rufipogonCitrus clementina32.427.2787.63283forward
CNT30604201Oryza rufipogonOryza punctata23.3799.5196.08204reverse complement

Expression of CNT30103672

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MESSYYLSYGGCSLTDSYINTYYILPFLIENCICSYCCFAGLSVPNN*

>peptide 2 (35 aa)
FFNRNRFNLVISFRLSLRSRLTCERPPLLKCSQNS*

Sequence

>CNT30103672
TTTTTTTAATAGAAATAGATTCAATTTAGTAATTTCTTTTAGATTAAGTCTTAGATCTCGTTTGACCTGTGAAAGACCTCCTTTGTTGAAATGTTCCCAA
AATTCCTAAAATAAAAGGAAAAATACTTTCCACTGCCCTAAACAAAGGGCGGGAAGCAAGACGGCGAACATATCCTCTAAATTGATCATCCTCAAATCAG
CTATTCCTGGGGTGGGGTATTGTCTGTCCCCATAAATAGAAAACTCTAGGAGTAATAAATTAGGAGTAAAGTATTGATATAATTGGAATTGCAGAAGCAA
ATACCAATTTACTAAAAAAAGAAGAAATATCTAATCTAAAGGACTCGTTTTCTTTTTTAGGATTAAACAAAAGGGTTCGCAAATAAAAGCGCCAGTGCCA
CAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCGCGTATTTTACCTTCTGCTTCTGGCTGTCTCGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAGGAGC
GAGGTATTGTAATGTAGCAGGGGAATCCGCCATTTCAGCTACTACAATAGTGTATTCCATGGCCCCCTCTTCATGGAAAGTAGTTACTACTTGAGCTACG
GAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACATCTTGCCCTTTTTGATTGAGAATTGTATCTGTAGCTACTGCTGTTTTGCCGGTTTGTC
TGTCCCCAATAATTAACTCTCGCTGACCGCGCCCAATAGGAATCATCGAATCGATAGCAATAAGCCCCGTTTG