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Detailed information on CNT30371010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH7|ATPA_ORYNI, E-value = 1e-117

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Oryza glumipatulaOryza sativa10016.1696.28914forward
CNT30703171Oryza glumipatulaQuercus lobata87.536.7182.62800forward
CNT30271983Oryza glumipatulaChenopodium quinoa27.0221.1186.64247forward
CNT30201764Oryza glumipatulaPisum sativum71.0186.4283.67649forward
CNT30710758Oryza glumipatulaGlycine max21.7766.5686.43199forward
CNT3095993Oryza glumipatulaSolanum tuberosum85.7819.5981.63784forward
CNT30301052Oryza glumipatulaTriticum aestivum99.3436.7293.06908forward
CNT30220359Oryza glumipatulaHordeum vulgare64.8856.7590.05593forward
CNT30541468Oryza glumipatulaBrassica napus56.4615.0881.01516forward
CNT3018020Oryza glumipatulaZea mays93.5420.7793.45855forward
CNT30627896Oryza glumipatulaDaucus carota34.6821.6183.91317forward
CNT30689283Oryza glumipatulaTriticum urartu43.6515.7394.99399forward
CNT30353938Oryza glumipatulaEragrostis tef48.1475.7395.45440forward
CNT30364459Oryza glumipatulaSorghum bicolor33.1574.0891.75303forward
CNT30121210Oryza glumipatulaCitrus clementina87.8620.6282.94803forward
CNT30103672Oryza glumipatulaOryza rufipogon31.0732.5394.72284forward

Expression of CNT30371010

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MESSYYLSYGGFSLTDSYINTYYIFALFD*

>peptide 2 (29 aa)
MNYVDSKGCHYCFFTIFFSEARGKIMPKF*

Sequence

>CNT30371010
GGGGGCCTTCTTAATAGAAGGAACATTTGGTGATAAGCTTGTGCCTGTTTGGAGAGAGATCATCATAAATTATTAAAGTATGCCGTTCGCGGTACATAAA
ATACTTAGCTAGGGCTGCTCCCGTATAAGGAGCGAGGTATTGTAATATAGCAGGGGAATCCACCATTTTAGCTACTATAATAGTGTATTCCATGGCCCCC
TCTTCATGGAAAGTAGTTACTACTTAAGCTACGGAGGATTCTCTTTGACCGATAGCTACATAAACACATATTACATCTTTGCCCTTTTTGATTGAGAATT
GTATCTATAGCTACTGCTGTTTTGTCGGTTTGTTTGTCCCCAATAATTAACTCTCGCTGACTGCGCCCAATAGGAATCATCAAATCAACAGCAATAAGCC
CCATTTGAAGGGGTTCATATACAGAACGCCTGAAAATTATACCCGGAGCAGGAGATTCAATTAGGCGAGATTTTTAAGCTACAATTTCGCCTCTCCCATC
AATAGGTTTAGCCAGAGCATTTATAACACGACCCAAGTAAGCCTCGCTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTGCCCTCTTGT
ATCATCAACCCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCCCTAGTCCCTTCTGCAAATTCGACTAATTCGCCTG
ACATTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACACGACTGATATTCTCAATCCCTACTTTTCTATTATATTGTTCAAT
ACGTTCGCGTAGAATTTTATGAATTACGTCGACTCGAAGGGTTGCCATTACTGTTTCTTTACTATTTTTTTTTCAGAAGCAAGGGGGAAAATAATGCCTA
AATTCTAAAGGAAA