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Detailed information on CNT30193829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222778Secale cerealeHordeum vulgare25.3225.2995.7395forward
CNT30588877Secale cerealeMusa acuminata16.7995.9783.21262reverse complement
CNT30245953Secale cerealeAvena sativa17.56103.0189.05274reverse complement
CNT30351181Secale cerealeEragrostis tef12.6339.0194.42197forward
CNT30596972Secale cerealeOryza meridionalis53.0866.1991.06828forward
CNT30369475Secale cerealeOryza glumipatula21.634.5386.65337forward
CNT30103640Secale cerealeOryza rufipogon49.55101.0590.82773forward
CNT30574986Secale cerealeOryza barthii22.1233.6988.41345reverse complement
CNT30116311Secale cerealeOryza nivara24.17100.5391.78377forward

Expression of CNT30193829

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLEENDSSNNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

>peptide 2 (35 aa)
MNRKGLVFFQEISSQPSHKRFFLTPMNSINARGKR*

>peptide 3 (39 aa)
MLYSKSICFKWIREIWIFRSAQIVSFSFCLDTKRYEIFD*

>peptide 4 (38 aa)
MKYLTKTGFHSTFLFLNNNLCYQLFRVFKVINCLISYF*

>peptide 5 (36 aa)
MLPTDTNRVGLACNPYHTISCRCNLSLNTQIYNRSI*

Sequence

>CNT30193829
ATCAAAATAGAATTAGTCCCGTCTCATTATGAACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCTAGCCAACCTTCCCACAAGAGGTTTTTCTTAACA
CCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAATAATTTCTTTGTTCTCAACGCCTCCTATTTAGAGGAATTAGCTACTTCAACGATCTTT
GATGGTTATAGGGGTATCCAAAGTACAAACCTGATGGTTGTTTGTTATCCCAACCATTCTTCCCAGCCCTGATACCGATCAGGAAGGGGGTAATTTCTAA
CAAAGTTTTTCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTCTCCCCTATGCTGCCTACGGATACTAATAGAGTAGGATTGGCCTGTAATCCATA
CCATACCATATCCTGTAGGTGTAACCTTTCGCTCAATACTCAAATCTACAATCGAAGTATCTGAAGCCGCATCAATCGAGGATACACGACGGAAGGAATT
GTTAGTTCGCCTCACCTTCCCGAAGCGTGGGTTTGTTTGCTTTACAAATTGGGTTCTCTCTATGCCAACCCCTTCTCTTTTTCGTAAGACTGAGGTATAG
GTAGGGCTAAAAAAAAGAAAAAAAAAGAAGTCAAATCGCACCATCTCTATAATAAGTAAATGCCTTTTTTTCTCCTGAGGTTGTCGGAATTATTCGCAAT
AAAATATTGGCTACAATTGAGGAGGTCTTATCAATGAAATTTCCATTTACACGGGATCTAGGCATAATTCCCAACCCATTCTATATAGAATTGTTTTCAT
TCCTTCACAAAATAACATAAAAACAAACACATTCGATTCTTATAATTATAAATAGATTGATCCATATGCTTTACTCTAAATCCATATGCTTTAAATGGAT
AAGAGAGATATGGATTTTCCGCTCAGCTCAAATTGTATCCTTTTCCTTCTGCTTGGACACGAAGAGATATGAAATATTTGACTAAGACTGGATTTCATTC
CACTTTCCTATTTCTGAACAACAACTTATGTTATCAACTATTTCGTGTTTTCAAAGTTATTAATTGTCTCATATCCTATTTTTGATTTCGATAGTATGGT
GTAGCGTATCTTATGCAAACGGAATTCTAAGGTTTCTTTATTTTATTATGCAATAAGAAGAATTCTTCCATTTTCTTTTTTTTTCTTTAGTTGCGGGAAA
ACCCAAATTAAAACTTTTATTTTATAGCGAGCGCAATTTCTAGTAAAAAATCCTGTATCCTTCCACTTAGATCAAAAGGAATTTTTCCAATAGAACTATG
GAACCCCCGAGTGGTTGCGGTTGTACCTGTACTGCAGGAATAAGAAAACTCGCTATTCACTCAGTTTATTTTCCATAATAAGTTATGTAGGAGAGATGGC
CGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTTTCTTAATTCATCAACGTTAA
GGATCACAATGTATCAAATCAAATAACCATTTTTTCCAGCAATAATATAATAGCTTATAT