Detailed information on CNT30245953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Avena sativaOryza sativa1004.7887.59266reverse complement
CNT30529029Avena sativaEucalyptus grandis33.464.3587.6489reverse complement
CNT30618959Avena sativaSesamum indicum34.961.4886.0293reverse complement
CNT3020650Avena sativaCitrullus lanatus28.954.4385.7177reverse complement
CNT30632297Avena sativaVigna unguiculata32.334.8687.2186reverse complement
CNT3047566Avena sativaPrunus dulcis31.24.389.1683reverse complement
CNT30193829Avena sativaSecale cereale103.3817.6389.09275reverse complement
CNT30390237Avena sativaTriticum turgidum92.4811.3890.24246reverse complement
CNT30237795Avena sativaBrassica oleracea29.72.0684.8179reverse complement
CNT30556045Avena sativaOryza glaberrima1008.1587.59266reverse complement
CNT3017916Avena sativaZea mays10012.991.35266reverse complement
CNT30232528Avena sativaAnanas comosus33.084.4593.1888reverse complement
CNT30655373Avena sativaRosa chinensis31.21.9887.9583reverse complement
CNT30596972Avena sativaOryza meridionalis10021.2687.59266reverse complement
CNT30369475Avena sativaOryza glumipatula72.5619.7786.01193reverse complement
CNT30430934Avena sativaPapaver somniferum33.081.3585.2388reverse complement
CNT3057361Avena sativaAmborella trichopoda33.081.7588.6488reverse complement
CNT30103640Avena sativaOryza rufipogon10034.7787.59266reverse complement
CNT30574986Avena sativaOryza barthii72.5618.8588.6193forward
CNT30116375Avena sativaOryza nivara73.3153.8790.77195forward
CNT30114189Avena sativaFicus carica31.22.1187.9583reverse complement

Expression of CNT30245953

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SPTYTLVFREREGVHIERTILVKQTHASGR*

Sequence

>CNT30245953
TAGCCCTACCTACACCTTAGTCTTCCGAGAAAGAGAAGGGGTTCACATAGAGAGAACAATATTAGTAAAGCAAACCCACGCTTCGGGAAGGTGAGGTGAA
CTAACAATTCCTTCTGTCGTGTATCCTCGATTGATGCGGCCTCAGATGCTTCAATTATAGATTTGAGTATTGAGCGAAAGGTTATACCTACAGGATAGGT
TATGGATTACAGGCCAACTCTACTCTATTAGTACCAGTAGGCAGCATAGGGGAGAAAAGCACTACA