Detailed information on CNT30116311


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza nivaraOryza sativa1006.74100375forward
CNT30193829Oryza nivaraSecale cereale100.5324.1791.78377forward
CNT30390237Oryza nivaraTriticum turgidum100.5317.4592.31377forward
CNT30588877Oryza nivaraMusa acuminata45.0761.984.62169reverse complement
CNT30556045Oryza nivaraOryza glaberrima10011.49100375forward
CNT3017916Oryza nivaraZea mays99.7318.1494.39374forward
CNT30232528Oryza nivaraAnanas comosus91.4717.3383.97343forward
CNT30596972Oryza nivaraOryza meridionalis10029.98100375forward
CNT30332506Oryza nivaraDioscorea rotundata2811.5387.62105forward
CNT30149145Oryza nivaraBrachypodium distachyon41.878.7495.54157forward
CNT30103640Oryza nivaraOryza rufipogon10049.02100375forward
CNT30550879Oryza nivaraOryza brachyantha22.6721.298.8285reverse complement

Expression of CNT30116311

Peptides detected in this lncRNA

>peptide 1 (37 aa)
NASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

Sequence

>CNT30116311
CAACGCCTCCTATTTAGAGGAATTAGCCACTTCAACGATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACTTGATGGTTGTTTGTTATCCCAACCAT
TCTTCCCAGCCCTGATACCAATCAGGAAAGGGTTAATTTCTAACAAAGTTTTTCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTATCCCCTATGC
TACCTATTAGTACTAGTAGAGTAGGATTAGCCTGTAATACAGAACCTATCCTGTAGGTGTAACCTTTCGCTCAATACTAAAATCTACAATTGAAGCATCC
GAGGCCGCGTCAGTCGAGGATACACGACAGAAGGAGTTGTTAGTTCACCTCACCTTCCCTAAGCGTGGGTTTCCC