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Detailed information on CNT30596972


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza meridionalisOryza sativa99.3622.3499.761243forward
CNT30193829Oryza meridionalisSecale cereale65.7952.7690.89823forward
CNT30292655Oryza meridionalisTriticum aestivum24.715.2882.2309forward
CNT30390237Oryza meridionalisTriticum turgidum46.226.7593.08578forward
CNT30588877Oryza meridionalisMusa acuminata20.9495.9783.21262reverse complement
CNT30510689Oryza meridionalisSolanum lycopersicum10.8723.6986.03136forward
CNT30556045Oryza meridionalisOryza glaberrima99.3638.0899.841243forward
CNT30245953Oryza meridionalisAvena sativa21.1899.6287.55265reverse complement
CNT3017916Oryza meridionalisZea mays100.6461.0689.591259forward
CNT30606803Oryza meridionalisGossypium raimondii10.8748.0687.5136forward
CNT30351181Oryza meridionalisEragrostis tef15.9139.4190.95199forward
CNT30369475Oryza meridionalisOryza glumipatula27.0234.6397.93338forward
CNT30103640Oryza meridionalisOryza rufipogon60.4398.8299.87756forward
CNT30574986Oryza meridionalisOryza barthii27.0233.0199.7338reverse complement
CNT30116311Oryza meridionalisOryza nivara29.98100100375forward
CNT30550879Oryza meridionalisOryza brachyantha17.2753.8799.54216reverse complement

Expression of CNT30596972

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDRKGLVFFQEISSQPSHKRFFLTPMNSINARGKR*

>peptide 2 (48 aa)
SLHLPSVHSTKRKNLENKNRISSISLWTERGWYFSKKSLANLPTRGFS*

>peptide 3 (51 aa)
MLEENDSSKNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

Sequence

>CNT30596972
TCCCTACACCTCCCTTCTGTACATAGTACTAAGCGAAAAAATCTAGAGAATAAAAATAGAATTAGTTCCATCTCATTATGGACCGAAAGGGGCTGGTATT
TTTCCAAGAAATCTCTAGCCAACCTTCCCACAAGAGGTTTTTCTTAACACCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAAGAATTTCTT
TGTTCTCAACGCCTCCTATTTAGAGGAATTAGCCACTTCAACGATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACTTGATGGTTGTTTGTTATCCC
AACCATTCTTCCCAGCCCTGATACCAATCAGGAAAGGGTTAATTTCTAACAAAGTTTTTCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTATCCC
CTATGCTACCTATTAGTACTAGTAGAGTAGGATTAGCCTGTAATACAGAACCTATCCTGTAGGTGTAACCTTTCGCTCAATACTAAAATCTACAATTGAA
GCATCCGAGGCCGCGTCAGTCGAGGATACACGACAGAAGGAGTTGTTAGTTCACCTCACCTTCCCTAAGCGTGGGTTTCCCTTACTAATTTGGTTTTCTC
TCCGCGAACCCCCGCTCTTTCTCGTAAAACCGGGGTGTAGGTAGGGCTAAAAAAACAAAAAAAAGAGTCAAATCGCACCATCTCTATAATAAGTAAATGC
CCTTTTTTCCCCGGAGGTTGTCGGAATTATTCGCAATAAAATATTGGCTACAATTGAGAAGGTCTTATCAATGAAATTTCCATTTATACGGGATCTAGGC
ATAATTCCCAACCCATTCTATCATTCTATATAGAATTCTTTTCATTCCTTCACAAAATAACATAAAAAAAAAACAAATCCATTCAATTCTTATAAATCGA
TCCCTATGCTCCAAATGGATAAGAGAGGTATTTCTGCTCAGCCCAAATTCTCTCTTTTTCCTTCTGTTTGAACAAGAAGAGATAGAAAATATTTGACTAA
GATTGGATTTCATTCCACTTTCCTATTTCTTTTCTCAACAACAACTTCTCTCATCAACTATTTCGCATTTTCAAAGTCATTAATCGTCCCATACCCTATT
TTCTATTTGATTGTATGGGGTAGGATACCTTATGCAAACAGAATTCTAGGGGTTCCTTTTTTATCGAATAAGAAGAATTCTTCCATTCTCTTTTTCTTTG
GTTTGGGGAAAACCCAAACTAAAACTTTTCGAGGGAGCGGAATTCCTAGTA