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Detailed information on CNT30369475


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza glumipatulaOryza sativa34.636.0797.63338forward
CNT30193829Oryza glumipatulaSecale cereale34.5321.686.65337forward
CNT30556045Oryza glumipatulaOryza glaberrima34.6310.3697.93338forward
CNT30245953Oryza glumipatulaAvena sativa19.6772.1885.94192reverse complement
CNT3017916Oryza glumipatulaZea mays34.6316.3989.05338forward
CNT30606803Oryza glumipatulaGossypium raimondii12.1942.0589.08119forward
CNT30351181Oryza glumipatulaEragrostis tef13.3225.7492.31130forward
CNT30596972Oryza glumipatulaOryza meridionalis34.6327.0297.93338forward
CNT30106472Oryza glumipatulaOryza longistaminata30.2327.4295.25295forward
CNT30103640Oryza glumipatulaOryza rufipogon34.6344.1897.63338forward
CNT30574986Oryza glumipatulaOryza barthii78.4874.898.56766reverse complement
CNT30116375Oryza glumipatulaOryza nivara12.633.9897.56123reverse complement

Expression of CNT30369475

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDCGKKGSLRNQFIYLAKWGKEGWKNRLFA*

>peptide 2 (37 aa)
MGEGRLEKQIICIECSNLWVLQSGELGTALKYFYEME*

>peptide 3 (30 aa)
MSVRKGKQAKLGEMKQKGVKPSEFIYSTPC*

>peptide 4 (61 aa)
VGVIFRSILKSTIEASEAASVEDTRQKELLVHLTFPKCGFLLLIWFSLREPPLFLVKPGCR*

Sequence

>CNT30369475
CTGTAGGTGTAATCTTTCGCTCAATACTAAAATCTACAATTGAAGCATCCGAGGCCGCGTCAGTCGAGGATACACGACAGAAGGAGTTGTTAGTTCACCT
CACCTTTCCTAAGTGTGGGTTTCTCTTACTAATTTGGTTTTCTCTCCGCGAACCCCCGCTCTTTCTCGTAAAACCGGGGTGTAGGTAGGGCTAAAAAAAC
AAAAAAAAGAGTCAAATCGCACCATCTCTATAATAAGTAAATGCCCTTTTTCCCCCGGAGGTTGTTGGAATTATTCGCAATAAAATATTGGCTACAATTG
AGAAGGTCTTATCAATGAAATTTCCATTTATACAGGATTGAACACTCTTGGAATTGTTCCCAAAGTTGTTACACACACGGCGCTAATAATGTCTGTAAGG
AAGGGAAAGCAGGCGAAGCTAGGTGAGATGAAACAGAAGGGAGTTAAGCCTAGTGAATTTATATATAGCACACCCTGCTGAATCTGAATGGATTGTGGAA
AGAAGGGAAGTTTGAGGAACCAGTTTATCTATTTGGCCAAATGGGGGAAGGAAGGTTGGAAAAACAGATTATTTGCATAGAATGTTCTAATTTGTGGGTT
CTGCAAAGTGGGGAACTTGGGACAGCTCTCAAGTACTTCTATGAAATGGAGTAAAAGAAGGGCTTCTTGCCTGATGTAGTTACTTATAACATGCTGATGG
ATGGGTAATGTAAGTTAGATCAGATTGAAGCTGCGAAGGCCTTACTGGCTGACAGGGAAAAGCAAGATGACTTATGATTTGACGGTTGACATAAGGATGG
TTGATTGATACACTTGGAGGAGCAAAAGGATATAATGTGACAATCAGTTGAAGATTCTTACTATAAAACTTACTTGTTTAACTTAGTTTTGTTTGCTCAT
CCCTTTCTCATTTTCCTTTTTATTCCCATATTGAAATTGACTTCAAATAAAGAGGATGTCTAATGCTGCATGCTGC