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Detailed information on CNT30351181


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Eragrostis tefOryza sativa81.587.484.22412forward
CNT30618959Eragrostis tefSesamum indicum30.692.4687.1155forward
CNT3020650Eragrostis tefCitrullus lanatus23.766.985.83120forward
CNT30201719Eragrostis tefPisum sativum23.7611.9685120forward
CNT3047566Eragrostis tefPrunus dulcis23.766.2285120forward
CNT30193829Eragrostis tefSecale cereale39.0112.6394.42197forward
CNT30292655Eragrostis tefTriticum aestivum35.848.9590.06181forward
CNT30222778Eragrostis tefHordeum vulgare35.8411.5989.5181forward
CNT30237795Eragrostis tefBrassica oleracea26.933.5483.82136forward
CNT30556045Eragrostis tefOryza glaberrima81.3912.5984.43411forward
CNT3017916Eragrostis tefZea mays104.1625.5189.35526forward
CNT30606803Eragrostis tefGossypium raimondii30.6954.7783.87155forward
CNT30232528Eragrostis tefAnanas comosus33.868.6488.3171forward
CNT30655373Eragrostis tefRosa chinensis23.762.8785120forward
CNT30627898Eragrostis tefDaucus carota30.695.0485.81155forward
CNT30596972Eragrostis tefOryza meridionalis81.5832.9384.22412forward
CNT30369475Eragrostis tefOryza glumipatula25.7413.3292.31130forward
CNT3057361Eragrostis tefAmborella trichopoda26.732.6885.19135forward
CNT30103640Eragrostis tefOryza rufipogon40.426.6791.18204forward
CNT30574986Eragrostis tefOryza barthii25.7412.794.62130reverse complement

Expression of CNT30351181

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKYLSKIGFHSTFLFFNNNFSHQLFRVLKIIPYLFFV*

>peptide 2 (37 aa)
KKESNRTISIINKCFFPLRLSELFAIKYWLQSRRSYQ*

>peptide 3 (52 aa)
MLFSPEVVGIICNKILATIEEVLSMKFPFIRDLGIIPNPFYIEFFSFYHKIT*

Sequence

>CNT30351181
AAAAAAAAGAGTCAAATCGCACCATCTCTATAATAAATAAATGCTTTTTTCCCCTGAGGTTGTCGGAATTATTTGCAATAAAATATTGGCTACAATCGAG
GAGGTCTTATCAATGAAATTTCCATTTATACGGGATCTAGGCATAATTCCCAATCCATTCTATATAGAATTCTTTTCATTCTATCACAAAATAACATAAA
AACATTTGAATTGATCCATATGCTCTAAATGGATAAGAGAGGTATGGATTTTCCGCTCAGCTCAAATTGTCTCCTTTTCCTTCTGTTTGGGCAAGAAGAG
ATATGAAATATTTGAGTAAGATTGGATTTCATTCCACTTTCCTATTTTTCAACAACAATTTCTCTCATCAGCTATTTCGCGTTTTAAAAATTATCCCATA
CCTTTTTTTTGTGTAGATTGTATGGGGTAAAGTACCTTATGCAAATAGAATTCTAGGGTTCCTTTATTTTCTTATGAATAATAAGAATTTTTCTATTCTC
TTTTT