« Back to Hordeum vulgare search


Detailed information on CNT30222778


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193829Hordeum vulgareSecale cereale25.2925.3295.7395forward
CNT30292655Hordeum vulgareTriticum aestivum25.6119.7894400forward
CNT30351181Hordeum vulgareEragrostis tef11.5935.8489.5181forward
CNT30595971Hordeum vulgareOryza meridionalis3.3323.9696.1552forward

Expression of CNT30222778

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSAIFLYSLPPRPLVQFLSLVKSAPLHLSRTTRGHSQAGVFFFTS*

>peptide 2 (38 aa)
MQYLTKTGFHSTFLFLNNNLCHQLFRVFKVINCLILYF*

>peptide 3 (36 aa)
GLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIREQ*

>peptide 4 (29 aa)
MRPDGVRSDLSISCKAQERGGSYPPETYR*

Sequence

>CNT30222778
NGGTCTACGAAGACTTTTGGGAAAACGTCGACGTTTGCTGGCTTATTTGGCAAAGAAAAATAGAGTACGTTATAAGAAATTAATCGGTCAGTTGAATATT
CGGGAGCAGTAATTTAATCCTTCAAATTTTTTTCTTGTTTTATTATTTTTTTAGTAGTCTTTATAGTAGTCTTAGATTTTTCATTTTGATGAGCCTCACT
TTGAGGAATTCATGGAATAATTCTATATAGAATTGTTTTCATTCCTTCACAAAATAACATAAAAACAAACACATTCGATTCTTATAATTATAAATAGATT
GATCCATATGCTCTAAATCCATATGTTTTAAATGGATAAGAGAGATATGGATTTTCCGCTCAGCTCAAATTGTATCCTTTTCCTTCTGCTTGGACACGAA
GAGATATGCAATATTTGACTAAGACTGGATTTCATTCCACTTTCCTATTTCTGAACAACAACTTATGTCATCAACTATTTCGTGTTTTCAAAGTTATTAA
TTGTCTCATACTCTATTTTTGATTTCAATGGTGTAGCGTATCTTATGCAAACGGAATTCTAAGGTTTCTTTATTTTATTATGCAATAAGAAGAATTCTTG
CATTAGGCCTTTCGCTTAGTTGTCCTTTCTACTAGAACTTCCCTTTAGCAGTTCTGGAACATCTATAGTATGCTTGAATGTCGGCAATTTTTCTATATTC
TCTTCCTCCTCGTCCATTAGTTCAGTTCCTTTCCTTAGTGAAATCTGCCCCCCTCCATCTTTCGAGAACAACAAGAGGGCATTCTCAAGCAGGCGTATTC
TTCTTCACTTCCTAAGAAGGCATTTTCTTGCTAACAAGCCATTCTGGCAAACAAAAGAGCTACTTCTATCAAAGAGGAGCAAAGGCTAAGCGGAACTCCT
CCCTTCGTGTCTTCTTCCTTTCCAAGCTTGTTGCGGGGAATCTGGGCTCTTTTTCAGCCCCTAAGGACTGCTACTTTGATGAATGAGGCCTGACGGTGTT
CGTTCTGATCTTTCCATTTCATGTAAAGCACAGGAACGCGGTGGATCGTACCCCCCTGAAACCTACAGATAGGGAGCTCCCAATAGAAGGGAGTAACCGA
AATCAAGCTTGCTCACTGAGCATAAGAACATTGAAAGCAGGCGGACTATCAGCAGCATTGCGATTCTTTATTTGGGCAAAGCCAAGGTATCACTTCGGGA
AGAAATGCTGTTTCAAACCACAAATGAGTTGGAATGGTCAATTTGGTTTTTCAGCTACTAGTACACTCGCTATGAAATCCTAGATCTTCTTGTGAGCTGT
CTCCACACCATTGAGAAATATTTGGATCAATGATAGCAGAGGCAGGCAAGAAAAGCTGCTCAAAGGGGACGGCACGATGATCGAGTTCGTGCTCGGGGAG
TGCCATGTCTAGCTAGTTCGTGCAGACACCCGCCCTTTCCAATCAATGGAGAATGGTTACTAGAGCTAGCGCCTGTCCCACTTTAGAACACTAAGAACGT
AATAAGCCTAGCCGGGACAAATGCACTCAGTGTTAGTCCGATCACCTCGGCTAAAATCATCT